DreINT0103414 @ danRer10
Intron Retention
Gene
ENSDARG00000032630 | neb
Description
nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
Coordinates
chr9:22995180-22998064:-
Coord C1 exon
chr9:22997933-22998064
Coord A exon
chr9:22995284-22997932
Coord C2 exon
chr9:22995180-22995283
Length
2649 bp
Sequences
Splice sites
5' ss Seq
ACGGTACAT
5' ss Score
6.53
3' ss Seq
CCTGTTGTTCTCTCATACAGGAT
3' ss Score
11.5
Exon sequences
Seq C1 exon
TTCAAGCCCAGCGCCGCAGCAAGGAGCACTCGCGCTCCACCAGTGCAATGAGTGGTGTGGGTGATGAGAAGTCAGAGGTGTCTGAGAACGTGGACCGCTACAGCAATGGCTTTGCCATCTCCGCTTTACACG
Seq A exon
GTACATGTGTTAACGGCTTGATTTTTATGAGATTTGGAGGTTTAGGAAGTAAAAATACAAGTCACCCATGTTATTGTGTGTATATTTTAACCATTCTTCCATGTTCCATTAAAAAATATCTGAATTTATACTTTTGATCCTATACTGATCTTCCACTGGAATGACAGATATCTATTTACTCATTTAAATTTCGTTTTTACTAACCTGCCAATTTGGCTGTTTTTTTTCTGGCCATTCGTCTAATTATAAAGGAAAGGTACTATATGTAAAAATGACTAAATAAAAATCATTAGAATCTTCAAAAACCACTAGAACCGTTCTATATTTTGCTGACTTGTGTACTTACATTATTCTCAAAAGTTGCAAAGAATATTAAAATCCAGAGAAATTAGCTATTTTATAGTGAGATGAAGGGTGTAATGAGTGGTCCTGATAATGACATCATACATCTTTGATTTCCAGTTTGGTTTTATAGAAACTAGGGAAACACCAGAGTGGCTTGAATATGTTATCATTTTAACTGGACTGCTCCGAGTAGCATTTTAATAGAACCCGAAAATGCATTTAGTATGATAAACAAGCTCAGAATCAGAAGCTGTAGACTGTGGCATAATAAAATATCTGCTGCTTTTGCGTGGCCTTACTTTATTTCACTTCAACAGCTTTCTGCTTCATATAACCAGGATAATACTTTTTCAATAGTTTAGCTCATCCATTAACATGATTTCTGCTGAAATCCCATAGGATGTAATGAAGATGACAGCACTCAGAGATTTCAATAAAACACAGCTTGGCTTGTTTTTGGGAATTTGCCCTTTCCAGTGGTAAAAAATTACATACTGGACCTATAATTAGATAAAAATAATTTGAAGAAACTTAAAACTGAAGAAAATGACTATAAAAGCTTGGATTAAAATATGTATTATTGTTAAATCTGATCTTGAATTATTGGATTGCCTTTGGGTTAGACAACAGCCAACCAAGTTTGCTCTGTGATTTATTTTATATAATTAACCGTTTATTTTGTTGTTGATCCTGCTTGTACTGTAGCTCACTCCAAATGTTTGTACATGTAGTCAATTCATAAATTGATCAACTATTTCCTTACGAATGTCAATGTACTGAACTCTGAAGAAAGCTTATAAAAGCCTCTCTTCAATGTCTCAAATCTCTGACTGTGTAGTACTGTAACATTTTGTTCTGTAGTCAATACTGAGGCTTCAGTTTGAAATTTAACACTGTTAGGCCCCTATCATACACCCAGCGCAATAAGCCGCAAGACGTGTTTCTATGATGTGTTGCTATTTTCAGACCAGCGCAACTCTAATTTTCCAGTTTTCCACCATTATGAGCATTAGAAATAGTTTTTAACCAATCTTTGTGCTTAACAAACAAAATTAATTATGTAGGATAATGGATGTCTGTGCATACAACACCTTTCCCTATTAACAAGAGTGAAAGTGGAAGTTAAGAACGAGGAGGCTCATTCTTGTGCTGTAGATGCTCTGTTTAACTGTTTTCTTGCTAGTGAAGCGTTCAGTTTTTCCACTTACAAAGTCCGCCATGTGAATAGCAAATCCGCTATGGCATGATGCAACTGACTTTTAAGAGGAATGGGAGATGAGACTCTTGAGTGGTTTATTCTCGAAACATACCCATAGGCCCTCATGGAATCTGCACGCAGAATTCCGCAGATTTTTGACATATGAAGATATTCATATGATTTATTTACAATATAGTTTGTACAGTAATATTTTCTGTCTTTTAGTAAATATATTATATGAGAGATTTGATTTGTTTACCAAATAAAGTGGATCTAATTGAATTTGCATTGTAAACATTAAATAAAAGTTAAAAAGGTATTGCTTCCAATTTCATATAAATACAAGTTTTTATTTATGATAATCCCAAAATAATTCTGCATAAATCAGCAGATTTTTAACACAATTCTGCACAGAAATAGCAAAAAATGTTTGCAGATTCCGTCTGTCCCTACCCATAACTCATTGAGAAAATAAGCTCAACCCTGTTAGACCGTGCGCTGTGGCGCAGATCGAATTTTTCCATCCTTAAAATAGCAAAAGTAGATTCGGATTCGGACGCGCCCTTAATGCTTTTGCACCCTGCGCTTTGGACTTTGCGCCTAGGCCGTTAAAACAGAGCCCTTAATCTTGTCTGCCATCACTATATGGACTCTCAGCAGTGGAAGTCACCATAATTGGGTACAATTAGAACCACATACTGTACACATTGCATTCCAATTTGCTCAAATACCAAAAAAAAAAAAAGAGAGAGAGAGAAACTTTTAGAAAAAGAAAACAAAATTGATAGCAGCCAGGAGAGAACAACATATAAATATGTTCCGCTCATAGAGCCAGCATTAGAAACACCTTGCATAAGCTGTGACTAGTTTGTGTGTGTGTGTGTGTGTTTAATTTGATGCAAAGATGATATAATACAAACTATAGCTTTCTAAATGTATATACATCCAAATATTAAAAACTTTTAAGGATTTAAGAGGCTGATGACCCTAATTCTAATGACAGATGGAAAATATTTGTAGGGAAAAGGCTTCATTTTGAAAACGCTAGTTCTGATTTGATTGAAAGTACACTAATGCAGTGAAACCCCTGTTGTTCTCTCATACAG
Seq C2 exon
GATACACACAGACCAAGACCATTGAGGTTCAGCAGAGATCTTCCTCAGTGGCAACACAACAGACCACAGTTTCTTCTGTCCCCTCACATCCATCAACCACTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032630:ENSDART00000143888:133
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.697 A=NA C2=0.876
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]