RnoINT0099866 @ rn6
Intron Retention
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37663243-37664066:-
Coord C1 exon
chr3:37663914-37664066
Coord A exon
chr3:37663350-37663913
Coord C2 exon
chr3:37663243-37663349
Length
564 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
CTTCTTTTTCTTCCTTGTAGCTT
3' ss Score
10.86
Exon sequences
Seq C1 exon
TCCAAGCTCAACGCCGGAGCCGGGACCAGTCCAGATCTGCCAGTGCACTGAGCATCAGTGGGGGTGAGGAGAAGTCTGAGCACTCGGAGGCCGCAGACCAGCGCCTTTCCACATACAGTGACGGAGGTGCCTTCTTCTCTGCAACCTCAACAG
Seq A exon
GTATAAGGAGACCTTCCCAGATGGGCATGGTCACGCACACCTGTAATCTACCATTCAGGAGGCTCTCACGGGAGGATTACAAATCTGAGGCTAGCCTATGCTATATGGAGACTTTGTCTCAAACAAGCACAACAACAAAAACCATGAAATGAATGGTACTAACAGTCAGAAGGTCAGCTCATTGAAAATGAATGGTACTGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAAACATCCGTAATAAAGTTAAAAAAAAAAAAAATGAAGGATACTAACAGTCAGAAGGTCAGCTCATTGATTGTTCTAAGCAATGTGTAAAATTTAAAAGTTACTACTTCCCTGAGGAAAAAAAACTAGAATTATGGAGTTGCATGTTTAATGACCTTCATAATTTTACTAGCTCATCTCTCCACAGGAGTCACTGAGAAAAAGACACTGCTTGGCTGGTAAGCACAGATGAGCTGTCTACCACATGCCTTTACAACCTTCTTTTTCTTCCTTGTAG
Seq C2 exon
CTTACAAACATGTGAAAACCACCGAGCTCCCACAGCAGCGATCATCCTCAGTTGCCACCCAGCAGACAACACTGTCTTCCATCCCGTCACACCCATCTACTGCCGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783:ENSRNOT00000059461:112
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.673 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCTCAACGCCGGAG
R:
CAGTAGATGGGTGTGACGGGA
Band lengths:
254-818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]