GgaINT0049829 @ galGal3
Intron Retention
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36802491-36803006:-
Coord C1 exon
chr7:36802857-36803006
Coord A exon
chr7:36802601-36802856
Coord C2 exon
chr7:36802491-36802600
Length
256 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTTTTTTTTCCCTTTTGTAGTGG
3' ss Score
9.61
Exon sequences
Seq C1 exon
TCCAAGCGCAGCGCCGCAGCAGGGAGCACTCCCGCTCTGCCAGCGCCCTCAGCATCAGCGGGGGGGATGAGAAATCAGAACCCTCCGAGGGGGTGAATCAGCACCTGTCCTACTACAGCAGCGGAGGCTTCTTTACCACCACTGCCACAG
Seq A exon
GTATGGGAACAAAGCTGCAGCTCCTCCCAGCTGGGGCCAGGCAGTGACAGGGCTTGGTGCTGGCTCACAGCTGGAATAAAAGTGCTGAGCTGTGGCCCTGACCAACTGCAGGTGTAGTGCTGTGGATAAAGGGCAGGTCTGATCACCTCCTGCCCCATCCCAGTATCCTTAGTCAGAGCAGCTGTGCTCCCCTCCCAATTCCGTAACAAACAAAAGCATTAATGTAAACTAAACTTTTTTTTTTTCCCTTTTGTAG
Seq C2 exon
TGGGTTATAAACATGCTAAGACCATAGAGCTGCCACAGCAAAGGTCAGCATCTGTTGCCACTCAGCAAACCACTGTGTCATCGGTTCCTTCCCACCCATCCACTGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020410:141
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.757
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCAGCGCCCTCAG
R:
CAGTGGATGGGTGGGAAGGAA
Band lengths:
221-477
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]