DreINT0104758 @ danRer10
Intron Retention
Gene
ENSDARG00000059097 | nktr
Description
natural killer cell triggering receptor [Source:ZFIN;Acc:ZDB-GENE-030131-1725]
Coordinates
chr24:20507776-20508029:-
Coord C1 exon
chr24:20507922-20508029
Coord A exon
chr24:20507821-20507921
Coord C2 exon
chr24:20507776-20507820
Length
101 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGC
5' ss Score
7.47
3' ss Seq
TTTTTTTTTTTTTTGCTTAGGCA
3' ss Score
9.2
Exon sequences
Seq C1 exon
GCGAGAAAGGCAGTGGCAAAGCTACAGGGAAAAAATTATGCTATAAAGGTTCAACTTTCCATCGAGTTGTAAAGAACTTCATGATCCAGGGGGGTGATTTTACTGAGG
Seq A exon
GTATGCACAATTATGCTTATAACTAAACCAGTTTGGTTTGGGTTGTGTGTTTGTTATTCTCACTATTCTTGTTAAAGAATTTTTTTTTTTTTTTTGCTTAG
Seq C2 exon
GCAATGGAAGAGGGGGAGAATCTATATTTGGTGGTTTCTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059097:ENSDART00000127923:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(38.3=100),PF132061=VSG_B=PD(70.5=83.8)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGAAAGGCAGTGGCAAAG
R:
GAAACCACCAAATATAGATTCTCCCC
Band lengths:
146-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]