GgaINT0091025 @ galGal3
Intron Retention
Gene
ENSGALG00000005282 | NKTR
Description
NA
Coordinates
chr2:1843604-1844532:+
Coord C1 exon
chr2:1843604-1843711
Coord A exon
chr2:1843712-1844487
Coord C2 exon
chr2:1844488-1844532
Length
776 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TCATGCTTTTTAATGCACAGGTA
3' ss Score
7.88
Exon sequences
Seq C1 exon
GTGAAAAAGGAATTGGCAAAACAACTGGGAAGAAGTTGTGCTACAAAGGCACTACGTTCCATCGCGTGGTTAAAAACTTCATGATTCAGGGTGGGGACTTCAGTGAAG
Seq A exon
GTAAAATGGGTTCTGTGGAGCAAACCTTATCTCTGTGGTTATAATGTAACTTTAGAATACAGCATGTAATTATTAAAATGCCTTGAAAGTAATATCATTGGTTTTCTGTTTCTTTGTTAATTTTTGAACTTCTAATGTGTTTCAGCTGAAGTTGATACTTCTTTAGAAAGAATTCTTAACATAAAGAAGAAAGCAGCCTTGCTGGAGTTGATAACATTAAAGCAGGATTCCAATCCAAACTATAAAGTTGCTGCTTTTCGTGTCAAAAGATCTGCCTTCTTGTATCCTGTATCTTGAAGTGTTATAAACTGATCTAATGTATATAAACTATAACTGATAGATACGTATGTGGTGGATGACTATCTTGTGTTGATGGTCAAGTGGAAGTAAAGATAACGTAGCTACTTGCTTATCTCATTATGGTGGTCTCTGAGCAGGACAAGATTGTTGGTGATGCCTGCTGTTGTCTTTTTTGCTTGGTGTTGTATTTTCTGTTGCTGCTACTTCAGCGAACAGCAGGGAGAATTAGCCTTTGGAGCCTCGCTTCAGGCTTTCTAGTGTTCAGAAGCACAAAAGCAGTCTTCATTTTCAATATTCTGAGTGTCAACAAGATAATGAACTGCATAATGAACGGTCCTGCCTTTTAATTAAGGATCTTATGCTTAGCTATTAGTAACTGGCTGGAGTATCCTGATGTGTTATAAATTGGCACACGTTATGCACAGCGCTTTTTATAAACAGAACAAAAGGTTTAATTCATGCTTTTTAATGCACAG
Seq C2 exon
GTAATGGAAAAGGAGGTGAATCTATTTATGGTGGCTATTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282:ENSGALT00000015998:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(38.3=100),PF132061=VSG_B=FE(59.0=100)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(16.0=100),PF132061=VSG_B=PD(19.7=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]