HsaINT0113809 @ hg19
Intron Retention
Gene
ENSG00000114857 | NKTR
Description
natural killer-tumor recognition sequence [Source:HGNC Symbol;Acc:7833]
Coordinates
chr3:42660512-42661200:+
Coord C1 exon
chr3:42660512-42660619
Coord A exon
chr3:42660620-42661155
Coord C2 exon
chr3:42661156-42661200
Length
536 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
AAGTAGGTGATTATTTGCAGGTA
3' ss Score
1.86
Exon sequences
Seq C1 exon
GAGAGAAAGGCCTTGGGAAAACAACTGGGAAGAAGTTATGTTATAAAGGTTCTACGTTCCATCGTGTGGTTAAAAACTTTATGATTCAGGGTGGGGACTTCAGTGAAG
Seq A exon
GTAGAGCTAAAAGTTGTGTTCCTAATAACTCCATCTATCAGTTTTTAAAGTATTTCATTATTACTTTTAGTTCTAAATATTGTGTCAGTTACAGTATGATATAAAATGTGGTCAGTGAATACTTGTTGGATGAGTGAATATTATAGGTCCAGAATGTATGAAAAAGCAAAGTACCACGTAAGACATTTTATTTTGTTTTTATGCAGTTTATTTTATTAATATTATAGTTACTTAGTGAATTCCTTTACAATGAATGCCAAAGTACTGTCTGATTGCTTTTGTTCTGGAATGTTTTTGGTGTTATTACTGTTTGAAATAAGTAGGTTGTGAAGATGACTTTTTTGATGGTATTTCTTGTAATGGGACTTGACATATATTTTACAGATGAAGTTAATTGAGGACTCTGAGAATTTTGATTATTGCAGCAGTTATAACATTCCAAGGTTTCCTTCAGCGAATTGAAGCTATCAAAAATGATTTCTGTGTTAGTATATTTTTAATGTTCATTATGGCTTAAAGTAGGTGATTATTTGCAG
Seq C2 exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGATATTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114857-NKTR:NM_005385:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(27.3=100),PF132061=VSG_B=PD(68.3=75.7)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(16.0=100),PF132061=VSG_B=PD(19.7=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)