DreINT0108276 @ danRer10
Intron Retention
Gene
ENSDARG00000087227 | oit3
Description
oncoprotein induced transcript 3 [Source:ZFIN;Acc:ZDB-GENE-130530-907]
Coordinates
chr13:4565733-4568593:-
Coord C1 exon
chr13:4568433-4568593
Coord A exon
chr13:4566146-4568432
Coord C2 exon
chr13:4565733-4566145
Length
2287 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TCTTCCTTCCTCTGTTCCAGGTC
3' ss Score
13.25
Exon sequences
Seq C1 exon
TCCCTGTGAAGTGTGATCCTAGTTCCATAGAAGTCTCGGTTCCCAAAGACCTGGTGGGAGGGCTTGAACTTTTTCTCTCGAACACTTCCTGCCGTGGCATTTCCAACGGGACTCACATTAATATCCACTTCAGTCTGAAGACTTGCGGCACTGTGGTCCAG
Seq A exon
GTAAATTATATATATATTGATGGCTCTGTGACTAAGTGTGGAATCATGGGAGTTGTAGTCCTCATAAACATATGACAGCCCTACAGAAATCATAGTGATAGATGAGCTATTCAGTCACTTCAAGATTTCAATATATATATATATATATATATATATATATATATATATATATATATATAGATCTTACTGAGAAGTAATATTCATGCTAATCCAAATAAAATTCTAAAATTATTTTTCTTTTTATTTTGCCACATGTATGGAACATTCTTAATGTCTGTATGAAATCAAAATTTACAATGTTTATTTTGCTAGCTCATATTGTTATTCAACTAAGTGAACAATTAATCCATGCAAGTTAAACTTAAATAAATAAAAAAAAGGATTGGTAATCCTCAATCAAACCCTGATCATTTGCATCTGCATTTGGAGTGGCGGTCCTTCTCTGTGGCTGTCAGTTTCAACAACAATATTCTTAAATATTTCCCTTTTACCATTAGTTTGCTATGAGGAAATAATATGCAAAAAGAAAGCCCCACCCACTACTTAATGTTCAGTTGGAATTGGAAGTACATCAACATATTGAAACAAAAGTCTCAGCAACTTCCAGTTCATGCAGATTACTACATTTCTGTTAAAATGTCCGTTTTTGGTATGGCAGTGGCTTTTTCAGCTGTAATACTTACAGAAAAAAGGTGAAAAGAGTCAGACTTAAATAAATAAGACAAATCAATCAATCAATAGTTTAATCAATCAATCAATCAATCAATCAATTTTTGCATAATGTTACCTCAGTGGCCCTGTCTGTTTGTTTTGTCAATGTGGATGTTTGCTATGTTAAGCAACGTTAAGCAATGGAAAGGCACTATATGAATAAAACTTCTTCAATCAATCAATCAATTAATGAAATCAATAAAATCAATCAATTAATCATTTTTTGCATAATGTTACCTCCATGGCCCTGTATGTTTGTTTTGTCAATGTGGATGTCCGCCTTGTTAACTTATTAGGATATCCTTGCATTTTACAATTCGACATCACATCTCTTCACTGTCACATCAATCATTTAACCAACCAACCAACCAACAAACCAACAAACTAACAAACAAACAAAACAAAACAACCAACCAACCAACCAACCAACCAACCAACCAACCAACCAACCAACCAAAATCAATCTGTCAATCAATCAATCAATCAATCAGTCACAATCAATCAATTAATCAGTCACAATCAGTCACAATCAATCAGTCACAATCAATCAGTCAATCAGTCAGTCACAATCAATCAGTCACAATCAATCAGTCAATCAGTCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAGTCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAGTCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAGTCAGTCACAATCAATCAATCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAATCAGTCACAATCAATCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAGTCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAGTCAGTCACAATCAGTCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAGTCAGTCACAATCAATCAGTCAATCAGTCAGTCTAACTCTTTAGGATCCATGTGTTTATCCATTAGCGTAAACTACAATTTTTACATCACGTTTCTTTACTGTCACATTAAACTACAATTTGATAAAATCAGTAATTTTACGGTTTATTTATTTTGTTTATTCTAAATTACAGAAATTTCTTTCAATTTAAATTTCTGGTACATATCTGTAATTCCCCCTCTGTTATTTCACAGTAAATTTCTGTAATTTAACGGCTGTCATTTTACATATTTTTTTCAGAAAAAATTATGGATTTTTTATTTTTTTTTGCAAATTTGAAAAAGCGGATAATCCTCTTCCTTCCTCTGTTCCAG
Seq C2 exon
GTCAGTGGCGACAAAATCATTGGCACCAACTTGGTGACAGGTTTACCACGGTCAAGTCCCAGCAGCAATGGGGATTTGATTGTGCGCACGAGCAAACTTTTACTGCCAATTACGTGTGAATTTCCACGGCAGTATGAGGTGTCGGACGGCTACCTGCCAAGTCTACGCAACACAGCGCTGGAGTTAGCGGGCCACAGCGAAGGAATATTCCCCTTCAGTTTGGAGCTGTTTAAGAGCGCTGAATTTTCCGAACCCTACAACCAACCTCCACAGCTGAAGTTACGCGACGTGCTGTACTTTGGTGTTGAGCCTCGGGAGCGGGTGGATGGCCTTGCTGCTTTTGTAGAAAACTGTTTTGCCACACCTGGTCCCAAGGCTGACCAGGCCTTGAAGTATTATCTCATCAAAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087227:ENSDART00000128422:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(20.1=92.6)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(55.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]