DreINT0108830 @ danRer10
Intron Retention
Gene
ENSDARG00000040482 | osbpl3b
Description
oxysterol binding protein-like 3b [Source:ZFIN;Acc:ZDB-GENE-090109-1]
Coordinates
chr16:21598725-21601434:+
Coord C1 exon
chr16:21598725-21598869
Coord A exon
chr16:21598870-21601307
Coord C2 exon
chr16:21601308-21601434
Length
2438 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGA
5' ss Score
4.72
3' ss Seq
GTGTATGTTTATCTGTACAGATC
3' ss Score
8.54
Exon sequences
Seq C1 exon
GCAAAATACTGGAACTCCAGTATGAATGAGGTGGAGGGATCGGTCACAGACCACAAAGGCAAAGTCGTGCACAAGCTGTTCGGGAAATGGCATGAGGGCATGTACTGCGGCAGTCCACCCTCTGCTACCTGCATCTGGAGGACAA
Seq A exon
GTATGAGCACACACACATACACACAGTCTGCCCTAATTTTTAGATACTTCACAATTTTCTACTGCCTGCTGGATGATGTATTTTACAGACAACCCATATAGACATATATGCAATATATCTTTCTAAATATTAAAAAAAAAAGTCTGTTTACATATATATTTTTCAACCATTGTAATTACAAATATGGTCAGATATATTAGTCTTAATTTTATGTATGTGTACATATTTGGCCAAATATTTTTAAACAGATTTGTATGTGTTTGTATTTCAAATGGTTGGAAAATGGATATGTAAATGGCCGTTTTTGCAATATTTTGAAATATATAGTGCATTGATGAGAAATATTTTATATATGTGAAATCCAAATATGAACTTTTTCACGTTTCAGATTGATTTTTAATATGGAAATATTGCTATATACTGTTAAAAGAAACGGTGAATTTATTTAAATGATTACGTTATTTTAACTTAGATATTTAATTTAATTGAATTTAATAGAAGAAAGTTGGTGAGTTTCTTTATATTGTTGTGAATTTAAACAAAGTATTACTGGATTTCTATATCAAATAGCCCAATGTCCAAACACATCTACTTGCTATTCTTATGCCCCTTTATGGTGATGTATACGTCAGGTGGACAAATCTAAACCCAAAAGAGAAACACAAATATAAATATGTGTATAACAAATAGTAATATTTTTAATGACTACAACAGCAATAAACAAATGTAATTAACATGTACAGTATAAACTGGCTACATCAGAGCTGGATTCTAAAGCTCTTCGAGGTGAAGAAAGTGTGTGAGGAGGCAGTGTTTTTTCATATATAAGTTAACAATAGTTATTTTTTATATCCTATATATTCTGCCTATATATTTTAAATCCTTTAATTTTTCACATTTAAATATATTTTTGAGCTGCTGCACATCTCTTTGTGTGTTATAAGCAATGTGTATCTGTTTTTGGGCTCGCCTATCACTATCATGCTCTTTAAATAAAAAATAACTTTTTGACTTTTAGTTGGTCAATGGTGGGGTCTATTTCAGTTGCCTCATAATAGCAACACACCTTCTTTTTTTAAAAATGATACTTGCGCTGGCCTAAAGTTATTAAAAGACACTTGGCTGTTTCTCTATTCCAAGAACGCTGAGAATGGACTTGCGTTCTAATGAAGACTATTCTTGCCAGGTTACCTCGGAAGAATGAACTTAGAAATGTGAGAAATGAGATTCTGAATTCTTCCTGATGGTCACATGACCTTCATGCATTTTTAACAGAAAATTATTTAAACATTACAGCATTCATACAATGATATGTATATAACATGCACAAAAATCGTACAAATATAGTTTGCACAATATAAATAAAACAGACTTTAATATGAATTTCTGCAAATAAACACCCTTAACGAGTCTTAATAATACCTTTATTAAGATTGTCATATTAATGTTAATTTCACCGTCTCATTTAGGAAAACTGTTGAAATATATTAAGTTATATCTTTGAACTTTACTAATAAACAGGTACTTCCCACCTCCTTTATTTAGCTGCAATGATTTTTTGGAACTTGTTGAGCGAGTTTTGCGCTCAAGTCCGCATTGAAGCATCTTCGATATCAAGAACTTTCACGTTTCTCCATTCTTACGGTCTTAAGTTTTGGAACTGAACTGGGGGTTGATGATGACAGTACATGAGAACACAAGGAGGCAAGATCGCTAAAGAATGCATATTTAAACAGCCACTGGTGTCACACCTGGTGCCACATTGCACCAGGTATATAATAAGGCCCTTAATCACACAAATTGGAGTATGCCTTAATGAGAGTTAATGAGAGACACCTGTGTGTCACCTTACTTGTCATAACTTATTGCCATAGTACAAATAAACTTTAATATACATTTTATACATTTTAGGAAACAGCTTGGGAAACTGAAACCTCAGGTTATTTTAAACGGGTCCCATAGTGGACAAATCTGAAAACAACACCCTTGCATTTTTATTTTTACAGTCAGTTTATTTATTTTGTAAAATATATATGTCACTATTCCACATAACAACAATGGTAGATTAGCTTACAGCACATTAGTTACAGCACCACATATTGGTTCAGCATGTATACTGAATCATTTTCACTTGGTTTTATGTGATATTTCTTTAGAGAATGCTGTCTTTATGCGATTTTTGAATGAGTTGGGGAAAAAAGATAGGCTACAAACACATGAAGACAGAATTTTCCCTAAGTTCTATTAAATTACTGTAAGGTTAAAAAAAGACTATGTTTACTCAAATGTTTTAAGGCAATACTGCTGGTTTCCACAAATGTTTTGAGTTATCTGAACTTATCAGGTTTCACAGTAGCAGTTCTTCATTCATTTGATTAATAATGCTTAATCTACATGAATTATCATCATCTTTTGTCTGTGTATGTTTATCTGTACAG
Seq C2 exon
ATCCCATGCCTCCTGAATTTGAGCAGTACTACGGTTTTACAAAGTTTGCTATGGAGCTCAATGAGCTCGACCCTCTTACCAAACCACTTCTTCCACCCACAGACACCAGACTACGACCTGATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040482:ENSDART00000145886:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.349
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.9=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]