HsaINT0118638 @ hg38
Intron Retention
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr7:24806776-24809951:-
Coord C1 exon
chr7:24809807-24809951
Coord A exon
chr7:24806903-24809806
Coord C2 exon
chr7:24806776-24806902
Length
2904 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
ATGATTTATTTTCTTCTTAGATC
3' ss Score
8.58
Exon sequences
Seq C1 exon
GCAAAATACTGGAGCACTAATGCCCATGAGATTGAAGGCACAGTGTTTGACAGGAGTGGAAAAGCGGTTCATCGGCTGTTTGGGAAATGGCATGAAAGCATCTACTGTGGCGGCGGCTCCTCTTCTGCCTGTGTATGGAGAGCAA
Seq A exon
GTGAGTGTCTGGGTTTGTGGACCCCAGGCTGTGAGTGGGTGGATGGGTGGGCATGACACAAGAAGCCACAGAGGACAGGAGTAGTGTCTGTTCAGCATCTCCAGCCTCTTCTGCTTTGAACTAGGTTAGAGGTGTAGGCCCTCTTTCCTTCATCCAGTCTTCACCTCCCTGTCATGCTTACTTACAGCAACACCTCTGCTGGGCTGCTGGGTCCCGGGTTCTTAACCCCAGAACAAGCATTGCTAATCCATGGGCACTCTCTGAGGGAATCTGGCAGTCCACATGCATAACTCTACTGGGTACTATAAAAGAGTATCAGTGAAATGCAAGAAGTCATTCTACAGCAAGGACAAAGAGGAAAGTGTTCCTGGAAAAGCAGTGACCCAGGAGACCTACAAATGTTAACTATCCCCAGGCTGACCTAACCCCAAAAGCCATCCTCATCACTCCTGTGATTCCAGAAGGGTGCTGAGCTCTTGGAGCAGATATGGGCAGAAGAGCTAGGGAACCCCAGCTTTCATCAGCATGTCCCCACCATACTTTAACATCTTATTCCATCTCCTAAGTCCGAAAATTATGTTGTTTCCAAGTCACAGTCATATTGTAAACCATTGTTCTGAGATATAACTGTTAGGATGCTTCAGGCTGGTAAAAAACCAAACAGAAAACCATTTGACTGGTGGTTTAAACCGTTAGGCTGTGTGCTATTACACAACAGTAAGTGAGTGGGGGGGGTGGCTCCAGGGTTGTTACATAGGCAATTTACCTGTGTCAAGGACACACAGATCAGTGAGGATACATTCTGCTACTCCCAGTGTGCCGTGGTGTTTCCCCTAATGAATGCAAAATGGTTGTTACCATTCAGTGTCATACCCCTGCATGACAGCATACCAAGCATGTAATGAGAGGACAAAAGAGCTTTCCTCTCTCGTGCCTCTCTTTTCTCAGGAACATTTCCTAAGATCCCGCAGCAAATGGGACTTTATATCACGTCAGCCTGCAGTGGGTTCAGACCCATCCGTGAACCAGTCACGGGCAACAGAGTAGGCAAGAGAGATTTAGATGTCTTGGATTAATCCCCAGTAAGGGCACAATGCCATTTGAACAGAATCAGTATTCTGTTAGCAAGCAAGAAAGAGAAATGATGGTCAAGTAGGCAGCCAGCAGTGGCCCTTTCAATGGGTAGCTGCCACATCTCCCACTGTTGCAGAGGTTGCCGTGAAGTTAGAATGAATTGGCACCAGTGGAAGCCTTCCTAGCTTCAGAGGCAAGCATGAGATTTTGCAAATGGCACAGTCTGTCTCCTTTGCTTAAAGTATGCATCACAGATGAGAACTGCGATCCTGTCTCAGTGTTAAAGTACCACCTTGATAAAGCAACACTGTTTAAATTTTTGTTACTGTCATTATTCCTTGACTTTATGTCTCTCTAATGGCAGTGAGCATCCCTGGCCCATCTTTAAGAAAAAGCACTATCTTCACTCCCTGGTTACTGGGGAGCTGACCAAGACACCATAGGAAACTTTGCTACTATTTTTATGCTTAGGATACACAGAGAATTAGACTAGTTACAAGGAGGACTTATGAAGATTCAAAAAATGGGTCCCAGTCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAAGCCAAGGCAGGCAGATTGTTTAAGGCCAGGAGTTCAAGACTGCTCTGGACAACATGGCAAAATCTCATCTCTACTAAAAATACAAAGATTAGCCAGGCATGGTGGTGTGCATCTACTGTAGTCCCAGCTACTCAGGAGGGTGAGGCATGAGAATCACTTAAACCCTGGAAGTAGAGGTTGCAGTGAGCTGAGATCGTGTCACTGTCCTCCAGCCTGGGTGGACAGAGTGAGACCCTTTCAATAAAAAAAAAGGGGGGGTCTGCAGAAGAGTTACTGGCAAGCATTTCTCTTGTTATGTGTGAAGAGCTTAGGCTGTAAGTAGATCTTAGTAGTCTACATTGGATTTATACAATATGTAAATTTGGGTATGTTTAGCTTTTTTGGAATTCCAGTTAGGGCAATGCACCTAATGTTTTAAAGATGTAAGATTGAGGAGAGGCAAGAATTGGTAAAAAGGGTAGGAATGGAAGAAAAGAATAACATTTATTAACCACTTGCTCTGTGTTCAGCACTGTTCTAGGTACTAAACAGAGTTTCAAGAGAATTTGACATCACTTAAATCAAAAACAGATTCTCTAGAGTGAGAATCAGGAAAAATGGACCCAGAGCTGATATTAGTATGTTTATTTATTGTTGTTATTATTATTATTATTATTATTTTTGAGATGGAGTTTCGCTCTTGTCGCCCAGGCTGGAATGCAGTGGCGTGATCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTCACTCTCCTGCCTCAGCCTCCCAAGTAGCTGGAATTACAGGCGCCCGAGACCATGCCTGGCTAAGTTTTGTATTTTTAGTAGAGATGGTGTTTCGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACGCCCAGCCGAGCATGTTTATTTTAAAATCAAATTATTTTCATAGCTTAAGCACTACAGAAACTTCACAGCATTGTATAAATTTGCTTTCTGACCACACATAGGAGGCCACATCCCTGTAGGCAGAAGAAAAATTATAGAGAAGAAAATTTATAGAGAAATGTTCAGTGCCTGTTCATTAGTCAGAATATTTTAACAGAAATGGAAGGGAGCTGAGAGAGAAAAATTGTAGCTAGGCTGAGACGAAAAAGGTGAAGGAATTAAAATGTAACATAAGTAACATGCAAGTTAGGGGTGAATGATTTATTTTCTTCTTAG
Seq C2 exon
ATCCTATGCCGAAAGGCTACGAGCAATACTATAGCTTCACACAGTTTGCGCTGGAATTAAATGAAATGGATCCATCATCAAAGTCTTTATTGCCACCTACTGACACTCGATTTAGGCCAGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882:ENST00000313367:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.186
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.9=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development