RnoINT0105774 @ rn6
Intron Retention
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80033721-80035779:-
Coord C1 exon
chr4:80035635-80035779
Coord A exon
chr4:80033848-80035634
Coord C2 exon
chr4:80033721-80033847
Length
1787 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
GTGGTTTATTTCTCTTTCAGATC
3' ss Score
11.33
Exon sequences
Seq C1 exon
GCAAAATACTGGAGCACTAATGCCCATGAGATCGAAGGCACGGTATTCGACCGCAGTGGGAAGGCTGTGCACCGGCTGTTTGGAAAATGGCATGAGAGCATCTACTGTGGCGGTGCCTCCTCCTCCACGTGTGTCTGGAGAGCAA
Seq A exon
GTGAGTGTCCACCAGATCCCAAGCATAGAACAGACGAGTGGCTTCCTCAGGGCAGGGGGGCATCACTAGGAAAGGAGCGGCCTAGGCTTCCCAAAGCATGCAGGGTCCCCTGACTGCTCTAACCCCAAAAACCTCCCTGTCTCCCTTGTAATCCCAGGACACTCCCCCTGGAGCAGCTGTGTCAATAAAGCTGTGGAAGCCCAGGCTATACCAGCAACCCTTTTGTCTTTGTATCTGAAAAGAGCCTATTTCCAAGTTGAGGTTGTTTTCTTAAACTATTGTCCCACATGTCGAGCAGGGAGGAAGAGGAGGACAAAAGAGCTTCTGACCCTTCATCTCCCTTTTCTCAAAAATAAAAACTTCGCAGGATTTCCAGCGAGTGTGCCTTTGCAGCACATCAGCCTGAAATGGGTCCCAAACCATCCCCATGCTAGTTGTGGGCATGAGGGAAGGCTCGGTTCACCTGAACTTGGTCTGGTGTTCTGTTAGATGTGTACAGAAGATGTGGCTGTAGGGCCAGTGGTGTCCCTTTCAGTGGGCTGCAGCCACATCTTCCTCTATCTTAAAGGTTACCGTGGAGCTGGAATCGTGTCCCAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCACCCACAAATCTGCATGGACAGTCTCTCATTTGCTGAAAGCTCTCACGGATCACTGTCAGATCTTTACCATTCTTCCTTGACTTTGTCTCCATGTGGACCTCCAGCTCCTCTGGCCTGTGTTGAAGGAAACCGTCTTTACTCTGGTGGGTGAGGGTCTCAGCTGGAAACCCCATGGAGCTGTGTTCCCATGCCCAGGCTTAGGATGAGGAACACACACTGGGATTAGCTGCCAGAGGGCCTTGAAAAAGCTTCCAAAGGTGTGTCTGTGGCAGAGTTTATGGAAGACATTTATATGTGGATGTGTAACCAGCAAGTGTTAAGACTATAAGGGAATTTCTGTATTGGATCTCCCTTGTATATACCTGACCCTGATTCTTAGCTAAGATCAAAGTTAGGGCAAACTAGAACCTAAAGTTCTAACCCTGGGATGTGAGATTTCCGGGGCTGAGATGTGGTGAAGAAAAAGGCAAGGAGGAAAGAAAAGAATACTCGTATTGACCGCCCTTTGCTCAGCATGGTCGCAACTGCTAGGAAGTTCTAGGAGTTTGGCTCTATGAACTTGGGTCTGATGCAATGGGAGTCTAGCTGGTTAAGAAAAGGTCTACTGGGTTTATTTATTTGATCTTTAAGACGCCGTTGCATGTGTGTATGTGTGTACATAAGTACGCATGCATGCGTGTGTACCTGTTTGTGTGTGCCTGTGCCTGTGCGTGTACGTGTGAGATATGAGTGAAATGTAGAAGTCAGGACAACTTTGTGCAGAAGTCAGTTCTTTCTACCGTGTAGATTCTGAGCTCCATACATCAGTCTTGAGTGGCATCTCAGTGGGCCCCTGGTGTGTATATTTGAATAACAAATTCTCTGATAGTTCATACAGTACAGATGCTTCACAGCACTGAATAAATTCACTACAGGACCAAGGCAAAGAGACTGAGAGCCCGAGATAGAAAACTCAGACAGGAAAGCCTACAGAGAAATACTCAGTAGCTGCTTGTTAGTCAGAATATTTTAATCGAAACGGAACAGCTTAGAGTTAGAGAGAAAACCTAGCTGTCCTGAGATGAAAAAGATGAAGGAATTAAGCTAACATAAACGAATTGCAAATGAGACCTGGGTGGTTTATTTCTCTTTCAG
Seq C2 exon
ATCCCATGCCGAAAGGCTATGAGCAGTATTATGGCTTCACACAGTTTGCATTAGAGTTAAATGAAATGGATCCTTTGTCAAGGTCTTTATTACCACCCACCGACACTCGTTTTAGACCAGATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011:ENSRNOT00000013828:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.116
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.9=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCCATGAGATCGAAGGC
R:
CTTTGATCTGGTCTAAAACGAGTGT
Band lengths:
254-2041
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]