DreINT0108876 @ danRer10
Intron Retention
Gene
ENSDARG00000063730 | osbpl6
Description
oxysterol binding protein-like 6 [Source:ZFIN;Acc:ZDB-GENE-070912-206]
Coordinates
chr9:1427062-1428011:-
Coord C1 exon
chr9:1427889-1428011
Coord A exon
chr9:1427116-1427888
Coord C2 exon
chr9:1427062-1427115
Length
773 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TCCTCTCTTCTTCTCCGCAGCGT
3' ss Score
11.7
Exon sequences
Seq C1 exon
GAGCCGGACAGTTGGGAGATCATCGAGGGTCTGAGGATTGGACAGACTCATGTGCAGCGGCCCGAGAAGCACGAAGGCTTCATGCTGAAGAAGAGGAAGTGGCCTCTGAAGGGCTGGCACAAG
Seq A exon
GTCAGTGGTCACCAACCATTCGTTTATTTTCCTTCGGCTTAGTCCCTTATTTATCAGAGGTCACCACAGCGGAATGAACCGCCAACTATTCTGGCATACCCAGCTCTGGGAAACACTCATTCCCACCCTCGGCATACCAACCCCATACACCCCACCTCCTCCTCCTTTATAATATATTATTGATTCATTCATTTTCTTTTTGGCTTAGTTCCTTTATTAATCAGGGGTTGCCACAGCGGAATGAACCGCCAACTTTTTCAGCATATGTTTTACACAGTGAATGCCCTTTCAGCTGCAACCCATCACTGGGAAACACTCACACACTCTTGCACACACTCACAGGCACTACGGCCAATTTAGTTTCTCCAGTTCCCCTATAGCGCATGTGTTTAGACTGTGGAGGAAACCCACACCAACACGGGGAGAACATGCAAACTCCACACAGAAATGCCAACTGACCCGGCCGGGACTTGAACCAGCAAACTTCTTGTTGTACGGCCACAATGGTAACCACTGAGCCACCCTGTGCATTCATTCATTTTATTGTCGGCTTAGTCCCTTTATTAATCAGGGGTCTCCACAGCGGAATGAACCGCCAACTTATCCAGCACGTGTTTTGCAGCGGATGCCCTTCCAGTGCTGGGAATCACCCTGTGCACATTCACATAACTGAAATATTCATGGGCTTGCTTTTCCTCCGTTTTCCTCTTTGTGATCTGCTTGTTTATTGTGAATATTGATTGTAATATTTCCTCCTCTCTTCTTCTCCGCAG
Seq C2 exon
CGTTTCTTCGTCCTGGATAACGGCATCCTGAAGTACTCCAAATCTCCAGTCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063730:ENSDART00000124777:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(16.7=36.6)
A:
NA
C2:
PF154091=PH_8=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]