GgaINT0047047 @ galGal4
Intron Retention
Gene
ENSGALG00000009172 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr7:14961087-14964586:-
Coord C1 exon
chr7:14964461-14964586
Coord A exon
chr7:14961141-14964460
Coord C2 exon
chr7:14961087-14961140
Length
3320 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TTCTTTTTTTCCACTTTCAGAGG
3' ss Score
10.8
Exon sequences
Seq C1 exon
CAGGAGCCTGACAGCTGGGAAATCATAGAGGGTCTGAAAATTGGCCAGACCAATGTACAGAAGCCAGACAAACATGAAGGCTTCATGCTGAAAAAGAGAAAATGGCCCTTAAAAGGTTGGCACAAG
Seq A exon
GTAAAGTTCTCATAAAACAGTCAAAGGATTATTGCTTCCTTTTATGATTTGGAATTTTTCGCCTTGAGAAAATAGGATGTAGGATGACTGACAAATGAAAGCCCAGGATTTCAGTGTATGACTTTATCTTCAGACTGTATAAAGAATTAGTCTGCACACACAGCTTTGCGGCTTCAACGTTTCAGGGCTGGGTGTGTAATGTTATAATCAGAATCCAGGCAGACAGTGTAAATAATACAGCAGCTGCCTTGCGTTTTAAGAGGTTTAGCCAATACCACTTTCATTCTTCTGAATACATTATAACAAAATAGAACTGTGCAGCTTAAGTTTGAATTGAGTTTACGGGAAAGTAGCCAGGACTCCATGAGAATTGAAGAGGGCTTTGGTGTGGATCAAGGCATTCTTACTGGAGAGCACCCCCTGGAGTTCTTTTCCCTTCAGCCTTGCTGGCTGGGCAGATTTGCTCATCCTTGTCCCTGAATTTGTTTGTCAATGTGTCTGTAATATTCTTTGTGGACATGAAGTGTGACTATTTAACAAAACACCATCACAAACACCAACAGCAACAAAACAACAACAAGAAGAACCAACCCCCGGATCTTCTGTTTGTATTTAGTTAATGTGGAGACATTTCTCCATGGATATTTTTACTACTGTTAACCTGAAACCCAGCGTTCATTCTCTCTTCTGCCTGTATTTTGTAACATAACAATTACACTTCTTTAAAATCCTCTGTTAGCAAGATTTGGTTATTGATGCCTACTCATATTACGCACATTGGAGTAGTTCAAGAACGATCATTTTCTAGGACACAGGGCATCGTATTGTGAAGAATAGTGAAACCTACTGCTATAAACAGCTTTTTTATTCCCAGTAAAATGTTAACTTTGATTTTTTTGGTCAACTTTTTTGTTAACTTTGATTTTTCTTTTATGCAACTTAGGTCTGTGTCCATATTCACACTGTATTAGTATAAATCACACCTTTTTTCTAATTTCTCTATCCTTTGTGAGTGTTATACTAACATATCCACATGCTTGATTATCAGTACGAGATTTCTACCCGCCTGCTACTCTTTTTTTCTGCTGGGCTATCAACCTTATTTTGTTTTGCTTTTTCTTTTACTTAGCTAGCATTTATGTTTTTGGCATCCAAATATTTATGTACCACTTGAGTTTAGCGTAGGGAGACTACAGGTTTCCAAACTGGCATTCTTGAAATACTGAAAGAGGAGAAAAGGAGATCTTACTTAAAAACAAAATGAAACAGCAAAAGTGAACAAGCAAGAATTAGTCTGATATATGAGACTATATGGGGTAGTTCACCGCTTACATTCCTTTGAAATGCAATACATCGATGTGTTGTTTCTTTGGCAAGCGTTTGCTGTAGGAACATTACATGTTAACAGTTCTGTAAAGAAGATTATGCCTGGTGATCTTTTTTTTCATCCTGGTTTTAGAGCAGTTATCTGTGTAAATAATTCTTAGTGTGATTTATTAGCTTCACAGCCTCCCTTTACACTCTACCTTATGTTTCACCTATGGAAATGGAACTTCTGAATTTTGGGTTAGAAACTGTGCATTGGCTGGTAATTTTTTTCCAACTATTGCCTTGATATCTTGCCGTTTCTGTAACACTACTTTGTGCTGAGAGCACAGTGAGGAGTTCCAGAGACAATGATTGTGCTGTTAGTGACCTGACAGCAAAGCCATGGAATCCTCTGTCTGTTGAACACTGCGTGTCAAATTCTGATGGTTCTCAGTGTGCTTTATTAGCATCTCAGTTATAACACGTACAACTTACGTTGTACTTCATCTGCTTCTGAAGTGCTGTATGCTTTGAAATGCAATGTGATAAAAGGTCATGGGTGTGTGGAGCCTACAGAGGCAGAAAAATAGGAAATTAACATCATGTTTTTCTGAAGTCTATTAATGACCATACCTAGTAAAACTAAAACTCCACAGCCCTGTTGTTTTGGCATCTTATTCAAGAGGCTACATCTCCAGCAAAGCTGGAATTTTATCACCCTGTGTCAGACCTTGGTACCATCTGTTGTGCAACTGACATCATTTCCAGAGGCGTCTTCAGGAGATATTTTCTGCCATGCAAATACTGACCCTGCTCATAATGCCAGTTTAACAAGTTCATGTCATGCAAATGTGATCCTTCTCTTCCACATCAGCCAGCTTAGAGAGTCTTGGGTAATAACTTGCTATGTTCCAGGTCATTAACATATATTAGTGCTTTAGGTTAGGCTCTAAAAATATGAATTTGTATTACTTGCATGTTTTTAAAGTTAGTGTTGATAACACAAGTTAGTGAATGTCAGTAAACATCTACATTTCCTGCCAGGCTGCATCTTTATGTTGTGTGCCAAATGCTGTGCTAACTTGTCCGCAATGCAGCTAGAGCCGTCTAGTATGCACAAGCTTCAGCAGCTTTAATTGTTGGAGAAGCGCGTTGGATTGGGGATTCTGCTCTCTGCTGTAGGGAAAAGCTGCTCAGCGAAATAAAGGTGTAGCAATGACACTGATAGGCATCGTCACGTTAGCTTTAATGTGCCTATTCCTGGTAGCTGCACCAATGAAGGTACAGTGACTCACACCATATAACTTGCAAATGTACAAAGCGCAAACCCTCCAGTGATCAGGTTATGTTGCTGGTAATGCTGTAATATTTCCATTTGTACTAATGCAGCTAGATTACATCTAGAAAATGTATAAGGAGCATGAATCACAGCTTCAGCTTTACTTCACTGTACAGAGGTCTGCTGTGAGTGCAAAGTTTTGGATGGTAGAGCCATGTCTTGCATCACTTCCCAGCTGGAGATCCAGGAGACCACAGGAATACCCATCTGTGGGTCTTCCTTCCAGGGTGTAGATCTTGTACTAGGAAGAGCTTTTCAGCTTCTGGATAGGGAGGACAGGCAGTTATGTTGAAACATGACCAGCTTATCTGGGAATAAAAGAGGAGAAAAACGAAGAAAAAGACTGATCTCTTTCAGCCTAGATTGTCTTTCTAGTAGACCTTATTGAATTGGCCAAAAAAACAGAAGAAATATCCTTAATGATTAAGGTTTCTTAAGTTCAACATAGACCATACTGTTGGAAACAGAATCTAGGTTTTCACACTTAAAAGATAATTGTTATCAAAGAAGGAGAAAAAGAATTTATTTGCTATCATACTTATGCTCTCTTTCCAACCTGCAAACAGTCCTAAATTGTTACAGAGGTATCATTTTCTTTTGCAGATAAATTATTTTGCACAGTTTAAGTTGCATCTGATCATTAAGAAAAAAAATTCTTTTTTTCCACTTTCAG
Seq C2 exon
AGGTTTTTCGTCCTGGATAATGGACTGTTAAAATATTCCAAGTCACCAATTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172:ENSGALT00000014942:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(16.7=35.7)
A:
NA
C2:
PF154091=PH_8=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]