MmuINT0113726 @ mm9
Intron Retention
Gene
ENSMUSG00000042359 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:MGI Symbol;Acc:MGI:2139014]
Coordinates
chr2:76384035-76386429:+
Coord C1 exon
chr2:76384035-76384157
Coord A exon
chr2:76384158-76386375
Coord C2 exon
chr2:76386376-76386429
Length
2218 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
GGAGTGTTTGGTTCTTGCAGCGC
3' ss Score
6.2
Exon sequences
Seq C1 exon
GAAGCTGACAGCTGGGAAATTATAGAAGGGCTGAAAATAGGCCAAACCAATGTCCAGAAACCAGACAGGCACGAGGGATTTATGCTGAAGAAAAGAAAATGGCCTTTAAAGGGCTGGCACAAG
Seq A exon
GTAACATCGCAATCAGATTGAGGCTAAGAGCATCAGCATAAAGGTCTGACTTGCTATTAGGTGGGAAACAAAGATCACTGGAGTTTATGAGTGTGAGATTTTGTATCTAGGACAAAAACGAAAACAAACAAAAACCCAGAATGGGGAGGAGAGAGGAGACAGAAGAGAGAGGGGGAAGAGAGAGGGAGATGAGAGAAGAGGAAAAGCCAAAACAAATTCTGTGGCTCTGAGGAGAAAGCTGTCTTCCATTCTCAGTAGAACCCTTTTTGTTAGGCCCCGTGGTGACTCTCACATCACTGCAGGAGCAACTTTGCGCATTCACCAGTTCTGCTGACAGACGTCATCTCAGAATAGAAGGGTTTGCTAACCAAAGGCTTGGGGAATGGCTGCCCACTGGCTCAAAGCAGTCAGGCTATGGATTACAACTTCCTTAAAGAAATGGACAGACAGGAAATGCTATGCCAACCTGTCTCCAGAGGATGAAGCCAGTCTAAGGGGCTTCCACGAATACATTGTTCCCTTGTACCCCTCAGCCCATACAAGTACCCCAATACCAAGGACTGCCCCTCATTCACCATTCTTTGGACTTGGGTTTTGTCCAGCAAGTGATTCCTCCTGGGCCCACCTCTTCCTTCCACCACTTTTCTTTATTATATCATCAGTAGCCTTATTTAGGTCTTTCCTGTGACATCCTGGAAGTTATTCCTCTCTAAACTTATTTAATAGAAACTTAAAATGGGGGGAAGCAGGCCAAAACCTCATTTTCAAAAATGAATAGCTAGGTTCTATTTGATACTCTTATTTCAGCAAAATGGCCGTGGACCAACATCCTTCTGGACCCTGCGTATTTAGCATAAACAGTAAGATGTCAATCCCCAGTGCCTTTTCTCCTCTCCCTAACACCACTGCATATTGACTAAGCATCAGCCCATATGAATGCCTAAGTTATGGGTGATTTGCTTTTTAATGTAGATTTTTTTTTTGATTCTGGCAGGTACCTGTTGTTTTCAAAAGGATTACAGCGTCCCTTTGTGGGTTCTAGGCAGAATGGCTTTGGGACCTGATATCCTGCTGTCTCAGCAGCTATGTGTTCATGCATCCCATGCAAATGATCCAGCCGAGTAGATTCCAGCAACAGAAGGACTTTCTGCAGAGCTAGAAGTAGGGTCCATGGTGTGGCTGGCTCCTGAGAGCTGTTTGGCATTTTTTGAGTGGCCCACAGAAAGAAAGCCAACATTAAAGAAGTCTTCAGTCTTTGTGGTTAAAAATAGCAAGTCTACTAAGACTGGATGATGTGACCCCAACGCAGATAATTGCCTATCCACCCTCCTTTTTAGTTTCTTATTTTGTTTCATATTCTATTTATTCTTGGAGATTTTCATACCTGTATACAGTGTCTTCTGATCATATTCACCATTTCTTTCCCAGTTTCTCCCAGAGTGCCCCAGTACACCCTCTTATCAACTTCATGCACCCTTTTGTTTTAACATATGTGTATTTCACTGGCCTCATTTAGTATTGCCATGTGCATTCATTGGGGCCATTCACCAGAGCATGAACAACTTGCCAGTAGTCACATGACCAAGGACAAAGCTTGAGAATCTTCCTTCCCTGGTAGCCACCAACTACCACTCGGGGTGGGGCCCCTTATTCTTAATGTAGCTTGGAAACAATATTTAATCTCATTTCCTAATAATAGAATGCAAGCATATTGCCAAGGAGAGTCACTTAAGCCTTGTGGGTAATTTATTAGTAATGGATCCAGTGTGATGGCATCTGTAATGGCTATGAGAAGTTTTAGAAAGTATCCATGGGTATCCAATGGAAATTCAGAGGTTTAGCTCTGGGGTGAACACTTCCCTGTAGAATAGTATAGAAGTGTTTACAGAATTGCCGTGATTTCTCCAGGGTTTTTTTCCCCTCACTTTCATAACGTCCTAATGCAGTTTGGTGATGAAGTGTAAGTTGCAGGTCTCCACCTTATGAAGACAAACCACAGAGAAAAGATTTCATCCCTGGCACGTATAAAAGTGTCCTACTAGAACTCTGACCCACTTACCTCACTTCCTGTGACTGACTGTGGCTAGATGCCCTGAATCGGTGTATCAGAACCATCAGACATGTAAACCACCGATGCCAAGGGACTTGCAACCCGCACTTGTGAATGCTTTGTGTAATTCAGAGAACAAACAGTCACTGGAGTGTTTGGTTCTTGCAG
Seq C2 exon
CGCTTTTTTGTCCTGGATAATGGAATGCTGAAGTATTCCAAGGCGCCACTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042359-Osbpl6:NM_145525:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(16.7=36.6)
A:
NA
C2:
PF154091=PH_8=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: