DreINT0108886 @ danRer10
Intron Retention
Gene
ENSDARG00000012981 | osbpl7
Description
oxysterol binding protein-like 7 [Source:ZFIN;Acc:ZDB-GENE-041010-212]
Coordinates
chr12:28667015-28667459:-
Coord C1 exon
chr12:28667367-28667459
Coord A exon
chr12:28667181-28667366
Coord C2 exon
chr12:28667015-28667180
Length
186 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TTTATCTGTGTTTTTTTCAGTCT
3' ss Score
10.62
Exon sequences
Seq C1 exon
TTAGATGTTAATTCCCGTCATACCAAAATCCACAAACTCTCCATATCTTCCAACTCCTCGGACGACTCCTTCCGCACTGTGGAACAAAGGAAG
Seq A exon
GTGTGTCTCTTTCCACCCATAATCCATTCTGTTCCCATTTCCTTTTCTTTACAGGTTAATGGGGTTTCAGCCGCTTTATTTGACTAAAAGGCTCTTTTGTTTTTGTCATCTTTCAGATTTATTAGTGTTGTCATGGAATTAAGTGAAAAGTTTGTAACTCAACATGTTTATCTGTGTTTTTTTCAG
Seq C2 exon
TCTGTCTCCAGCCGCTGTTCTTCTTTCCGTGCACCATCGATTGCTGATTCGGTGGCGGAGTATTTTGACGCGTGTGATGAGCTGAAGTGTGCTAGCTCCTCTGAAATGTCTGATGAGTCTGGTCTGAGTGATGGATCCAGTAATTCAGAGCCCTATGAGGCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012981:ENSDART00000020667:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=NA C2=0.357
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCGTCATACCAAAATCCACA
R:
CCTCATAGGGCTCTGAATTACTGG
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]