RnoINT0105830 @ rn6
Intron Retention
Gene
ENSRNOG00000009473 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:RGD Symbol;Acc:1309141]
Coordinates
chr10:84991689-84992996:+
Coord C1 exon
chr10:84991689-84991784
Coord A exon
chr10:84991785-84992858
Coord C2 exon
chr10:84992859-84992996
Length
1074 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCTCCATCTGGTTCCCACAGCAA
3' ss Score
8.2
Exon sequences
Seq C1 exon
GTTTCTGAGGCTCCGGATGGTCAGAGACGTCTCCACTCACTCTCCATATCCTCAGACACCACAGCAGACTCCTTCAGTTCCCTGAACCCGGAGGAG
Seq A exon
GTGAGGCTCGAGGGTAGACAATGGAGTCCTCCCTGTGCTTTTCCTAACAGGGGCCAGGGTTGATTTTATTTTATTTATTTTTATTATTATTACTTTTTTTTTTTTTTAGTCTAGAAATACGGGGAGGGGTTGGAGGGAATCCAGGTTCCCTTTCTCTCACATAACACCACAGTTCTCTTGACTGATCTTGGAGATGGCTTGTGCATCATATTTTGGTTTGGTTTGGTTTGGTTTGGTTGTAGTACTGAGGCGTGAGCCCAGGGCCTTGCCCATGCTAGGCAAGAGGTCTATGTCTGAGCCGCACGTCTGGCTTCTGAGACTTCTGTTTTTACTTCAGAGCTGGTTCTTACCCTTTAGCAGGCCTGCCCAGCCTTTTCACATCCCAATTCACACCCAAGAGCAGCATAATCCACCCCTGTAGTCACAGCACTTGGGAGGCAGAGGCAGGTGGAGCACTATGAATTCAAGGCCAGCCTGGTCTACAGAGTAAGTTCTAGGACAGTCAGGGCTACACAGAGAGACCCTCCCTGTCTTGAATAAGCAAACAAACAAAAGTGTATAAACAAGTTAATAACAACAAAAAGTTACAAACAATTTTTACAGTGCTTTAAATACGTTTATGATTTTGCATTAGTTTGCCTTCAATTGTGTATGGCTCTTGGGCCACAGGTTGGACATATCTGCATGACAAAACTAAAACCTAAAGAATCTAATCAGTGGACTCATGGTCCCTCAGTAGTAGTCAGGCTGGATTAGAGTCCGAATGTGGTCATTGCATGCCAGCTTTGTATTCTGAGCCTCAGTCTTCTAATCTGCAAGATGGAGACACAGCTGCACCCGTCCATGGGGTATGGGTCCAGACTGAGTGGGCCAGCAAGGGAGAAGGGTGGAGGCAGGCTCTGTTGTGTCCAGCACTTCTTCCAAGTCCAAGTTTATCCCTCTCCCTTAAGCTCTCTCCTCCCTCTGCTATTTCCGCTTAGCAGGGGTTGAGTCTGGTGGGGGGTGGACAGTTCCCTCTCTAGGAACTGTCACTCCAGTGGCCTCTGAGGTCTCGCCTCCATCTGGTTCCCACAG
Seq C2 exon
CAAGAAGCTCTGTACAGGAAAGGCCGGGAGCTGACCCCCCAGCTGTCCCAGAGCAGCGTGCTGTCCCTCGCTGACTCCCACACCGAGTTCTTTGATGCCTGTGAGGTGCTCCTCTCTGCCAGTTCTTCTGAGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009473:ENSRNOT00000067665:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.812 A=NA C2=0.413
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTGAGGCTCCGGATGGT
R:
TTCTCAGAAGAACTGGCAGAGA
Band lengths:
230-1304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]