MmuINT0113734 @ mm9
Intron Retention
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:96917842-96919926:+
Coord C1 exon
chr11:96917842-96917937
Coord A exon
chr11:96917938-96919773
Coord C2 exon
chr11:96919774-96919926
Length
1836 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CACCCATCTGGCTCCCACAGCAA
3' ss Score
7.3
Exon sequences
Seq C1 exon
GTTTCTGAGGCCCCGGATGGTCAGAGACGCCTCCACTCACTCTCCATCTCCTCAGACACCACGGCAGACTCCTTCAGTTCCCTGAACCCGGAGGAG
Seq A exon
GTGAGGATCTAGGGTGGACAATGGCGTCATGCCATTTCTCCTGGGTGTGAGGGCCAGGGGCCAGGGGTGATTTTTTTTTCTTTCTCCTTTAGTCTAGAAATACATGGAGGGTGGGAGAGGATCCAGCTTCCCTTTCTCTCACATAACACTACAGTTCTCTTGACTGCTCCTGTAGATGGCTTGTGCATCATATTTTGGGTTGGGTTGGGTTGGGTTGGGTTGGGTTGGGTTGGGTTGGGTTGGGTTGGTTGTAGTACTGAGGCGTGAACACAGGGCCTTGCCCATGCTAGGCCAGAAGTCTGCATCTGAGCCATATGTCTGGCTTCTGAGGACATTTTTCCTTTTACTTCAGAGCCCGTGAGGCGTTGGTTCTTACCCTTTAGCAGGCCTGTCCAGCCTTTGACATTACCTAAGGACATACCCAAGGACAACATAATCTACCCCTGTAGACCCAGCACCTGGGAGGCAGAGGCAGGTGGATCTCTGAATTTGAGGCCAGCCTGGTCTACAGAGTGGGTTCTAGGACAGCCAGGGCTACACAGAGAAACTCTGTCTTGAAAAAACAAACAGGGCTGGAGAGATGGCTAAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTTAATTCTCAGCAACCACATGGTGGCTCACAACCATCTATAATGTGATCTGATGCCCTCTTTTGGTGTGTCTGAAGCAGTGACAGTGTACTCACATACAATAAATATTAAATTTAAAAAAAAAAAAAATAAAGAAAAGCCAGGCAGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAATGACTTTCAGGAAAGCCAGGGCTACACAGCGAAACCCTGTCTTGAAAAACCGAAAGAAAGAAAGAAAGAAAGAAAGGAAGAAAGAAAGAAAGAAGGAGCCGGGCGTGGTGGCCCACGCCTTTAATCCCAGCACTCGGAAGGCAGAGGCAGGCAGATTTCTGACTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGAACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAACCAAAAAAAAAAAAAAAAACAAAAAACCCAAAAAACAAAAAACAAGCCAACAAAAATGTATAATCAACTTAATAACAACAAAGAAAGTTGCAAACTATTTTCATAATGTTTTGAGTAAGTTTATGATTTTGCATTAGTCTGCATTCATTTGTGTACAGCTCATGGGCCACAGGTCAGACATATCTGCATCACAAAACGAAAACCCAAAGAATCTAATCGACCGGTTCATGGACCCTCAGTAGTAGCCAGGCTGAATTAGAGTCTGAGGGTGGTGATTGCATGCCAGCTTTGTATTCTGAGCCTCAGTCTTCTAATCTGCAAAGTGGAGACATAACTGCACCTGTCCATGGGGTGTGGTTCCAGACTGAGTGGGTCAGCAAGGAGAAGAGTGGCCGGGCGTGGTGGCACACGCCTTTAATCCCAGCACTTGAGAGAGAGGCAGAGGCAGGCGTATTTCTGAGTTTTAGGCCTGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCAAAAAACAAAACAAAACAAACAAGGAGAAGGGTGGAGCTAGGCTCTATTGGTGCCCAGCCTCTCTTCTAAGTCCAAGATTTTCCCTCTCCCTTAAGCTCTTCCTCTCTTTTGCTACTTCTGCTTGGCAGGAGGGTGGGGGGTGGATAGTTCCCACTCCAGGGACTGTCACTCCAGTGGCCTCTGAGGTCTCACACCCATCTGGCTCCCACAG
Seq C2 exon
CAAGAAGCTCTGTACATGAAAGGCCGAGAGCTGACCCCCCAGCTGTCGCAGAGCAGTGTGCTGTCCCTCGCCGACTCCCACACCGAGTTCTTTGATGCCTGTGAGGTGCTCCTCTCTGCCAGTTCTTCCGAGAATGAGGTGAGGGAGGAGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534-Osbpl7:NM_001081434:12
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.740 A=NA C2=0.336
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTGAGGCCCCGGATG
R:
CCCTCCTCCCTCACCTCATTC
Band lengths:
248-2084
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: