DreINT0108890 @ danRer10
Intron Retention
Gene
ENSDARG00000012981 | osbpl7
Description
oxysterol binding protein-like 7 [Source:ZFIN;Acc:ZDB-GENE-041010-212]
Coordinates
chr12:28663184-28663420:-
Coord C1 exon
chr12:28663357-28663420
Coord A exon
chr12:28663263-28663356
Coord C2 exon
chr12:28663184-28663262
Length
94 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
TCTTTATTTCCTGAATGCAGACC
3' ss Score
6.7
Exon sequences
Seq C1 exon
GTTTCCCATCACCCACCTATATCTGCATGCCATGCAGACTCTGACAATTTCAGCTTCTGGCAGG
Seq A exon
GTATGTTTTACAGCCGGTGTGATCATTATGTGTTGCATGTCTGAATTTAAATCTCATTCCTTTAACTTTTTCTTTCTTTATTTCCTGAATGCAG
Seq C2 exon
ACCAGAGATGGAAGAACAAATTTTGGGGCAAATCTTTGGAGATCATGCCAACCGGGATGGTGAACGTGACTCTAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012981:ENSDART00000020667:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(6.0=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(7.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCATCACCCACCTATATCTGC
R:
TAGAGTCACGTTCACCATCCCG
Band lengths:
135-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]