RnoINT0105835 @ rn6
Intron Retention
Gene
ENSRNOG00000009473 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:RGD Symbol;Acc:1309141]
Coordinates
chr10:85000671-85000937:+
Coord C1 exon
chr10:85000671-85000734
Coord A exon
chr10:85000735-85000858
Coord C2 exon
chr10:85000859-85000937
Length
124 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTCCCCCAACTGAATTCCAGACA
3' ss Score
5.03
Exon sequences
Seq C1 exon
GTCTCCCATCATCCCCCGATCTCCGCGTGTCATGCAGAATCTGAGAACTTCATCTTCTGGCAAG
Seq A exon
GTGAGGGATGTGGGGCTGGATGACCATGAAGGTCAGGGATAGCGGGGTGGGGGTGGCTGGAACATTCTGGATCACTCTGGCCTCATCTCTGCTGCTCCCTGTCCCTCCCCCAACTGAATTCCAG
Seq C2 exon
ACATGAAATGGAAGAACAAGTTCTGGGGCAAATCCCTGGAGATCGTGCCCGTGGGGACAGTCAATGTCAGCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009473:ENSRNOT00000067665:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(6.0=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(7.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCATCATCCCCCGATCTC
R:
GGGCAGGCTGACATTGACTG
Band lengths:
139-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]