MmuINT0113739 @ mm9
Intron Retention
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:96926903-96927173:+
Coord C1 exon
chr11:96926903-96926966
Coord A exon
chr11:96926967-96927094
Coord C2 exon
chr11:96927095-96927173
Length
128 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTCCCCCAACTGCGCTCCAGACA
3' ss Score
4.55
Exon sequences
Seq C1 exon
GTCTCCCACCATCCTCCGATCTCCGCGTGTCACGCAGAATCTGAGAACTTCATCTTCTGGCAAG
Seq A exon
GTGAGGAATGTGGGGCTGAAGGACCATGAAGGTCTGGGAGAGCAGGGGAGGGGGTGGCGGCTGGAACATTCTGGATCACTCTGGCCTTATCTCTGCTGCTCCCTGTCCCTCCCCCAACTGCGCTCCAG
Seq C2 exon
ACATGAAATGGAAGAACAAGTTCTGGGGCAAATCCCTGGAGATCGTGCCTGTGGGGACAGTCAATGTCAGTCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534-Osbpl7:NM_001081434:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(6.0=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(7.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCACCATCCTCCGATCTC
R:
GGGCAGACTGACATTGACTGT
Band lengths:
139-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: