DreINT0108893 @ danRer10
Intron Retention
Gene
ENSDARG00000012981 | osbpl7
Description
oxysterol binding protein-like 7 [Source:ZFIN;Acc:ZDB-GENE-041010-212]
Coordinates
chr12:28660434-28662604:-
Coord C1 exon
chr12:28662454-28662604
Coord A exon
chr12:28660561-28662453
Coord C2 exon
chr12:28660434-28660560
Length
1893 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
ATATCTGTTTTTCCTTACAGATC
3' ss Score
12.9
Exon sequences
Seq C1 exon
TCACGTTATTGGGGTGCAGATGCAGCCAGAAATCAAGTGCAGGGTCAAGTTCTTGACCAGACTGGGAATGTTATTCATCGGTTTGGTGGCTTTTGGCATGAAGGAATCTTCTGTGAGACACTACCCGTTCCACAGTGCATCTGGAAGCCAA
Seq A exon
GTAAGTACGCTGAAATAAAATGAGGAAAACTGATGTTTTCAGAAATTGCTAGTAAATTTCACAGTTAGTTAAAGAGAAATATGAGTAACACATTAGTTGCATCCCAAATAACACTCAATGCAATATGCACTGTTGTGGACCATGAGTTGTTATCTAAAAATGGGCAATGTGTCAGACGAAGATGAATCGGAGTCGGAGATTTAATCGAAGTTTACTGAAGATAGTTTACAGTTTCATCAGAAGAAGCCTACTTCAGCTACTCTATTTACTATCTAACTACAGTATTTTGCCGATGATACACAGGGCAACTATTTTGAGCAATGTTGATAACTTGGCAACTTACGTATGTATGTATATGTTAAAACATGGATAGACAATTTTCAAATAGGTACACAGAGGTGGGCTTATATTTTCTTCCAAGATATTATGGAGACAGGATCCAAAGTTCAGAGAGCCAGTAGGCTATTAGGAGCCGATCTCAGAACTGTAAGAATGATTGACAAAAGAATACAGTAGATAATAACAGAACTGTATTCTCAAGACTGTTTCCTATGCTATCTGCCATCTTATCAAAACTAAAAGAATAAACACAGCAGACTTATACCAAGACAGCTTCTCTTATAACAGAATCATTTAAAAGATTTCATTCTTCCACACAGTAAAATTCACATCTAGTTAACATCTATTCAAGTAACATCATGCGTCCAGTTCCACATGAGAGGTCTCAGTGACCTCTTGAAATGACCTAAAGTTTCTGAGAACAAATAACTTGGCATACAGAAAAAGCAATGAGGGATGACACTAAGGTCATCATATAATCTAGGCCAGGGGTGTACAAACCTGGTCCTGTAGGGCTCTTGCCTGCATATTTCAGTTCCAACTCCAATTCAACACACCTGAACCAGCTAATCAAGCTCTTTCTAGGTATGCTAGAAACTTCCAGGCAGGTGTGTTGGCGTGGCCCTTAAACACAAATTCAACATTATTAATAATCATAAAGTCATAAGAAAGAATGTGCGTCAGACAAATGGAACACAAAATTGTTTTACTTGATAGAAATTCAAACCATTTCTCAGACAATGTTTAGCACTTTAGCAAATAGTGAGATAATAGACCAAACTGCCAATCAGTACCTGTCATGAGTACGACCGCATTCACCATCAGAAGGCGGTGTGAATGAGGAGAAATTTGCTTTCCCAATCTAACAAAAGTAGACCCTGATAGCTTCACCCCTTCAGCTATGTGAGCAAATCTGCAACTGTTGAATGCATGAACTAGCCAACATTCCACACTTCTGTTTGGCGGTCGAATGAGTAAAATCATCTGGGTGTTTAAAGTAAACTTTTGAGAATAAACAGAATATTTTATTGTGAATGCACTACTTATGCTCTTTTGCACATTTACTATTTATCCTACAAAATAGATAACTTGGCATAAATTGCATAAGTATACGATTTGGGAGCACCTATTGAATTAAAGGTAAAAAGTCTTCTTATTAATGACACTTTGCTGATCGATAGTTTTTATTTTGTTGTTGATGTTGAAAAATAAGTTTTAGAAAGCAATGATTCGTCAGGTCCAAACTCTTCTTTTAAAGCCACCATGAACTGCTGTTTCAACCCAATTATCTTTAATACAAATAATTTCGAATTAGAACAGGACCTTCAAAAAATGTATCATTCTACAAATAAATGGAATTCTATTTTCGAATAAAAGCTTTTGTTAAAACAAAATTATTAGATTTTTGGTTAACGCTATGCAAAAACTCACCACAAGATCAGGATATAAAGACAAAGTCTTTTTTTCTGTGGTTATTTTGTCAAACAGATATAGATACCTAAGATATCTCTTTTTGTTTGCGGATGTTGTTAGAATATCTGTTTTTCCTTACAG
Seq C2 exon
ATCCACAGCCAAAGAACTACTTGCTCTACTATGGCTTCTCAAGCTTTGCAATGGAAATGAATGAGCTGGTGCCTGAACTCAAGCCCCTGCTGCCCCCTACAGACACACGCCTGCGCCCTGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012981:ENSDART00000020667:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.116
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(14.2=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGTTATTGGGGTGCAGATG
R:
CTTTGGTCAGGGCGCAGG
Band lengths:
278-2171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]