MmuINT0113743 @ mm9
Intron Retention
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:96928519-96928874:+
Coord C1 exon
chr11:96928519-96928663
Coord A exon
chr11:96928664-96928747
Coord C2 exon
chr11:96928748-96928874
Length
84 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
CAGCTCCTTGCTTCCCCCAGATT
3' ss Score
7.58
Exon sequences
Seq C1 exon
GCCAAGTACTGGAGTTCCAACATCCATGAGGTACAAGGTGCGGTGCTTAGTAGGAGTGGCCGCGTCCTCCACCGCCTCTTCGGGAAGTGGCATGAGGGGCTGTACCGAGGCCCCCCACCGGGTGGGCAGTGCATTTGGAAACCCA
Seq A exon
GTAAGTAGGGTGTCTAGGGAGGGCTGGGAAGGATGAGGATGGCTCTAACATAGTTCACCTGTCCCAGCTCCTTGCTTCCCCCAG
Seq C2 exon
ATTCGATGCCTCCAGACCATGAGCGAAACTTCGGGTTCACTCAGTTTGCCCTGGAACTGAATGAGCTGACGTCAGAGCTGAAGCGGACCCTGCCTTCCACTGACACACGGCTCCGACCTGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534-Osbpl7:NM_001081434:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.233
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.7=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGTGCGGTGCTTAGTAGG
R:
GCTCATTCAGTTCCAGGGCAA
Band lengths:
178-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: