HsaINT0118711 @ hg19
Intron Retention
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:16387]
Coordinates
chr17:45886230-45886586:-
Coord C1 exon
chr17:45886442-45886586
Coord A exon
chr17:45886357-45886441
Coord C2 exon
chr17:45886230-45886356
Length
85 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
AGCCCCTTGCCTTCCCCCAGACT
3' ss Score
8.2
Exon sequences
Seq C1 exon
GCCAAGTACTGGAGTTCCAATGTCCACGAGGTGCAGGGCGCTGTGCTCAGTCGGAGTGGCCGTGTCCTCCACCGACTCTTTGGGAAGTGGCACGAGGGGCTGTACCGGGGACCCACGCCAGGTGGCCAGTGCATCTGGAAACCCA
Seq A exon
GTAAGTGGAGGGGTCACAGAGGGCTGGGTGAGGCTGGAGCAGCTCAGGCATGGTGCACCTGCCCCAGCCCCTTGCCTTCCCCCAG
Seq C2 exon
ACTCAATGCCCCCCGACCATGAGCGAAACTTCGGCTTCACCCAGTTTGCCTTGGAGCTGAATGAGCTGACAGCAGAGCTGAAACGGTCGCTGCCTTCCACCGACACGAGACTCCGGCCAGACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025-OSBPL7:NM_145798:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=NA C2=0.233
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.7=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTTCCAATGTCCACGAGG
R:
CAAACTGGGTGAAGCCGAAGT
Band lengths:
183-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)