DreINT0109290 @ danRer10
Intron Retention
Gene
ENSDARG00000034189 | oxsr1a
Description
oxidative stress responsive 1a [Source:ZFIN;Acc:ZDB-GENE-070620-25]
Coordinates
chr2:24058836-24059110:+
Coord C1 exon
chr2:24058836-24058901
Coord A exon
chr2:24058902-24058987
Coord C2 exon
chr2:24058988-24059110
Length
86 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TTTATTTTTCTGTTTAAAAGGTG
3' ss Score
8.69
Exon sequences
Seq C1 exon
AACACTGATTACTTGAAAGAAAAACTGCTGGAGAGGGCACCTACAATAGGAGAGAGATCAAGGAAG
Seq A exon
GTGTGTGACAGATTTACTTGATATTATGTCTGACTGAGGAATTGCATTAGCTGTGCTTCATGCTGTTTTATTTTTCTGTTTAAAAG
Seq C2 exon
GTGCGGAGGGTCCCGGGCTCCAGCGGTCGGCTCCACAAGACTGAGGACGGAGAGTGGGAATGGAGTGATGATGAGCTGGATGTGGAGAGTGAGGAAGGAAAGGCAGCAGTGGCTGCTTTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034189:ENSDART00000047073:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=NA C2=0.878
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGAAAGAAAAACTGCTGGAGA
R:
CACTGCTGCCTTTCCTTCCTC
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]