DreINT0110056 @ danRer10
Intron Retention
Gene
ENSDARG00000027867 | paplna
Description
papilin a, proteoglycan-like sulfated glycoprotein [Source:ZFIN;Acc:ZDB-GENE-070815-4]
Coordinates
chr17:51057623-51061159:-
Coord C1 exon
chr17:51061039-51061159
Coord A exon
chr17:51057960-51061038
Coord C2 exon
chr17:51057623-51057959
Length
3079 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
GTTGTCTCTTGGCCTCTTAGCAC
3' ss Score
5.85
Exon sequences
Seq C1 exon
TCAGATACCGTACCATCTGCACCTGTAGACTGTCATTCATCTACATACGGCTGCTGCTATGATGGTGTGACGGCCGCTAGTGGGACTCATGGAGAGGGGTGCTCCAACCCCCCCAGCAACA
Seq A exon
GTAAGTTCCAGTATAGCTAAAGTGACCATCTGTCTTTACAGTTTTTGTTTTTACAAATGCAATTTGTACTTAGTGATGGTTGTCATTACTTAAATTGGGGTTGTTATTCTAATTTTGCCTAATCTCATATTAGTCTTCCGTTCATATGGAGTAGTTCAGCAATCCTCTTTCTGTCACATCTGTCAGTGACCACCTGAGGGCGCTGTAGTGGATCAGGACTCAGAAGGCCCTACAGCGTCCCAGAAAGACTACAATTCCATACATACCGCGCGTATACACCGGAACACATACACTGACCTGTCATCACATCTGTTCTGTGTTACCGTTGATTATCTGGACTATATATTCAATCATTCCACCGTTGTTTGTTATCGCGTCGTTTGTCTTCCTTGTCTTCCTTGTCCGAGTATCCAGTAAGTCTAGTATTCCGAGTTTGTTATTCTGTTCTTGTTCTTGTATTTTGCCTTAGTCTAGTTCGTGTGTTATTTGTCTCGTCTGTTTTCTAGTTAAGTTTAGTTGTTTGAGTTTGTTATTCCTGAGCCTCGTCTCTGATTTAGTTTCTGGTTTTGTTGTTTATTTGTTACTTTGCACCTTGATATTTTTGAATTTTTGTTCACTGTTTTTGCACTATATTATATTAAAATCTGCACTCGAATCCGCAATCTTTTTGTTCCCGTTCGATATTGTTTTGATCACGCTTAACGTGACACTTTCCTCCAAAAAGACTTTAGCTTTTGAATACTCATAAGAGAAAGACACAGCTTTGCGATTCTCTGTGGAAAATGCAGAGGGCCTGGATGTGTGGATGTGTGGATGTGTAATCCCACCAATCTTGCACCACCCAACCTGCTTTGAGCTGGGATCAGGTTTTCCGATTTAATTCTGTCCCCCTCCCCAACCTCACTCCCATCCGGGTCACGGCACCAATGTAACCCAGCCAGTCCTGCACCGCCAAACTTGCTCTGAGCTGGTATATAACTGGCAACTCTCCACATGGGAGTGGGTTGCTCTAACAAGGAGGCTAAAGACCATGGCCACTAGCATCTGTCACTAGAGCACCTTTTCGGTTCAAAGGAGTGAGGTTTACCTACAAAGCACTTCACTAGTTGGCCTCTGTCCCACCAACAGCTTCTGCTTAGTGATCCACTACAACCAATGATATACAATTAAAACACACTTCTTTGGCCATTCTCCACAAGTCCTGTGCAGTGTTGCAGTAACTACTTATTCTCAGTAAAGTTCATTAATTAAAGGCCATTTTTGTGTTTGTGTGCATTCTCTAACATGTGAATTGGCCATATAAGGAGTTCCACCTTTAATAATGTTTTTTGAAGGCTAAAGGATTTGTATGTCCTATATGCAAATTGTTTTTGTTCTCAGTCTACAATTTGCATGATAATCTACAACTTTAACACTGTAAACTACAGTGAGGGTGATGGAAAATTTGTACAATTGTGAAAACCCCCCTTAAAATTGATATTTGTGAGCACATGGTGTTGATATTTTTGGCAAAATGGGTTTTGTGCCAATAGAGATGAGTTTTACTTGTAGATTGTGACCAGAGGACCGTCTAAAAGGAGCAAGACCATGTAATAATTAAGGCCAAGTCCAAGACCATATTTTGCGACCCAGGCTCATGTGTCCAGGGCTACACTTTTCAGAACCAAGAAATATGTACCTGGGGCTATGTCTGCTTGGAGATTTTGTTTTCACAAATCAACTAGAGGCTGTCGTGTACTTATTTGACAATCCCAAAAACGTTTTTAAGGCATGTATTATCATAAATCCACCAGAGGGCGCTGTGTACACTTCTGTCAATCTCCACATCCTTCTCGCCCTTGTCCACGAGAGAAGCCAGTCAGCTTGTTGTGCATAATTTATCAGCTGGTCAGCAACTAACCCATCTGCCCCTTCTTTAAACCCAACCGATATTGTTTTCAGAAACAAATTAGAAGAGAAAAGCCATTGTGGTCTCGTGCTTTTAAGACCATTTCACACTGCTGTTTTGGGTGTGTTGTTTAACATGGTTTTTGGAACTGTCTTTTGCCGGACTCAAACCCCAGTCCGATATGCCTCCGAAGTGCAAAGGTAGTCTAGGTTACATCAGAAAAGCTGTCCATATGGAGGTAAGCAAACCCAGGCTCATTACAGATATGTACCTCTGTATACATTACTGGGGAGCGCATAATATGTCCCAGGAGGTTTTCGTGAATCCGACAGAGGCCGCTGTGTATGCTTTTTCAGATCTCAAAGATTTCTCGTGAGTGCCATTCGTGACTGCTCTTCTCGCATAAATCCATCAGAGGCCGCTGTCGACTGACTGCCTGACTGACTGACTGACTGACTGACTGACCGACCGAGCGACCGATTGACCGACCGACCGACCGACTGACCAACCAATTACTCTGCCAACCCCCTTCCATAAATCCAACCGATAGTGTTTTCCAAGGCACCGATTGACAGTGTTTTCTAAAAAAAATCCAGAAAAAGAATAGCCCTTGTGGCCGCCTGATTTTTACCACGTTTTCAGATTTTACCACATTCTCACCCTGTTATTTACTTGTTTATTTTATTTTTTGCCTTTTGTTTAACCTGCTTTCTCTGCATCTTAAGTCCGCCGACTTATGCTGTAAGCCCCTGGGCTCACACAGGAGTAAGCGGTCAGCGGGGGTGCAAAAAAAAAACAGAAGCCGTTGGCGGCATCATACCGCCTCGTAGCGTTTGTTTTAAAGACGAAATGCAGCCGTATGTACTTCTGGCTACATAATTTGCGCTCTCCAGAAATGTATATGGGGCTACATATTCACAATGAGCCTATGTTGAAGTAAGCGGTCAGCAGTAGCGCAAAAGAAACAGAAATTGTCAAATGCTTCAGTAGCTTTCATTTTACACACAAAATACAGCCAGATATTTTGTGGTTCTCCAAAATGTTGTCCTGGGAACGTATTCCCAACGAACCTGTGTTGATATTTTATTCCACTTCCATTGTTGTGTCTCAATTACAACACTGTTGTTTAAGAACAATTGCAGACTTCTCCAACTTTCTACAACAGATGCATGTTGTCTCTTGGCCTCTTAG
Seq C2 exon
CACAACGTTCTCTGTCCTGTGACCTACCCAATACGGTCGGGCCATGCGATCAGTGGACGTCCCGGTTCTACTTTGACCGTTCCGCCTCACGCTGCTTACACTTCTGGTATGGTGGCTGCCATGGCAACAGCAACAATTTCGCCTCGGAGGAGGAATGCCAGAAGATGTGCCTGAGATCAGAACTAAGGCAGCGGGACCAGGCACATGTTTTGTCTTTGCAGCACGGTAGACGGCGTTTCCCTGCACACGTCCAGCTCAGCTCTAGTGGAGCACACCGTGCACAGCGTGCTCACCAGCCGGCCTCCAATGCCATGCAGCAGAGCAACCCGGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027867:ENSDART00000154532:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.363
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001418=Kunitz_BPTI=WD(100=46.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]