HsaINT0120113 @ hg38
Intron Retention
Gene
ENSG00000100767 | PAPLN
Description
papilin, proteoglycan like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]
Coordinates
chr14:73261156-73262827:+
Coord C1 exon
chr14:73261156-73261294
Coord A exon
chr14:73261295-73262349
Coord C2 exon
chr14:73262350-73262827
Length
1055 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
ATCACACCCATGCCCTGCAGCCT
3' ss Score
5.93
Exon sequences
Seq C1 exon
GTCCACAACACCCACCAGCCCCAGGCCCAGCAGAATGAGCCCAGTGAGTGCCGGGGCTCCCAGTTTGGCTGTTGCTATGACAACGTGGCCACTGCAGCCGGTCCTCTTGGGGAAGGCTGTGTGGGCCAGCCCAGCCATG
Seq A exon
GTGAGTGGACACCCCCTCTCCTCCTTCTCGATGGGTAGACTCTGCTCCCACCATGCCTCCAGCCCCCACCCAGGACCAAAGACCTTCCTACCAGCTCAGTTATTCATTCATTCCTACCACAAATGTTGATTGCCTGCTAGGTGCCAGGCCAGAGAGCAGTGCCAGAGTGTTCTCGCATCCAGCAGTTTGAACCTGTGGCCTTCTGGCTGCTTCTGGGAACTGGGGAGGGTGGGAGGTGGGGATCCCAAGGGCCTGGGAGGCAGTCTCGTGCTTGGGAGTCAGCCCCTTCTGAGGCAGAGCCAGTGCAGGGCAGTTAGTGCCGGGATGGGCAGGGGTGCCCTGACCCTGCCTGGAATGTGGGTGGAGTAGCAGGAGCTGAGTGCTGGAGGGAGGGTAGGGGTCAGGGAGGTCTTTGAGGTTGCAGCCCTGGATGAATGAGTAGAGCTGCTGGGAACCATCACGAGGACCTCAAAAGCCGGGCTAGGGCTGTGGTCAGGGCTCGCAGGAGGCACCCATGGTCATGTCTAAATGTGGAGAGATGGGTCAGGCCATGCTGGCGAGGGCTGCTGGAATGGCAGGCTGGGTGCTGGAGGTGGGCTCAGTGGCCAGTCAGTGCAGCATCCTGGGGACAAGGGCATGCCCTTGCTGGGCATCTTCACACGCCCTGGGTGGCTCAGGTCTGTGTCCCTATCACAAGCTAAGCAGGCAGGGTCACCCTCTGGGCTCACTTTGCATGTGACTTCAGGTGGTCTGGTGGCAGGGAAGGCCAAAGGTCCAAGGGAGCCGGCCCAGGGAGCCCTGGCCCTGACCTCCCAGAGGCTCTAGCTCTGTGGGTGAAGGCTGCTGTGGCACCAGCCGGGGGCAGGTCTGCACAGTGGACAGACTCTGGTGGAAGCATCCTGGATCCCAGGGCCAGGTCAGGCCCCCAGACAGGGGTGTAGACATGCTTTATAAGTGGGGAAGGGCCTGCTTCCTGAGTCGGAGGCTGAGAGGATGGAGGGTGCAGCTTTAGTACTGGGCACCTCAGTGACTTATATCACACCCATGCCCTGCAG
Seq C2 exon
CCTACCCCGTGCGGTGCCTGCTGCCCAGTGCCCATGGCTCTTGCGCAGACTGGGCTGCCCGCTGGTACTTCGTTGCCTCTGTGGGCCAATGTAACCGCTTCTGGTATGGCGGCTGCCATGGCAATGCCAATAACTTTGCCTCGGAGCAAGAGTGCATGAGCAGCTGCCAGGGATCTCTCCATGGGCCCCGTCGTCCCCAGCCTGGGGCTTCTGGAAGGAGCACCCACACGGATGGTGGCGGCAGCAGTCCTGCAGGCGAGCAGGAACCCAGCCAGCACAGGACAGGGGCCGCGGTGCAGAGAAAGCCCTGGCCTTCTGGTGGTCTCTGGCGGCAAGACCAACAGCCTGGGCCAGGGGAGGCCCCCCACACCCAGGCCTTTGGAGAATGGCCATGGGGGCAGGAGCTTGGGTCCAGGGCCCCTGGACTGGGTGGAGATGCCGGATCACCAGCGCCACCCTTCCACAGCTCCTCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100767:ENST00000340738:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=NA C2=0.666
Domain overlap (PFAM):
C1:
PF0001418=Kunitz_BPTI=PU(22.6=25.5)
A:
NA
C2:
PF0001418=Kunitz_BPTI=WD(100=33.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGAATGAGCCCAGTGAG
R:
ATCCGTGTGGGTGCTCCTTC
Band lengths:
345-1400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development