GgaINT0053604 @ galGal3
Intron Retention
Gene
ENSGALG00000009315 | PAPLN
Description
NA
Coordinates
chr5:28484266-28486889:-
Coord C1 exon
chr5:28486760-28486889
Coord A exon
chr5:28484448-28486759
Coord C2 exon
chr5:28484266-28484447
Length
2312 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
3' ss Seq
TGTTCTGCTCTTTTTGGCAGCAT
3' ss Score
7.59
Exon sequences
Seq C1 exon
GCAAGCCAAGCCTTGTCCCAGCAGCACCCCTCTGGCGAGTGCCGCAGTTCAGTGTACGGCTGCTGTTTTGACAATGTCGCTTCAGCTTCAGGTCCTGAAGGGGAAGGATGTCTCAATAGGCCCAACTACC
Seq A exon
GTAAGTGATGCTTTGACTTGTTTGGTTAGAAACATAGGAAGAGTCACACAGAAATCAGTACCATTTGGAAACTTCCTGTGTAGAAGTTCTGCTCTCTGGAAATTGTAGTGAATGGTCTCCTTGAAAACAAATTCTGCCTCGTGGCTGGGATAGGGAAGGTTAAAGGGAATCATAATATGGCCTGGGTTGAAAAGGACCATAATGATCATCTTGTTTCAGCACCCCCATCCCCCCCCCAGGTATGTGCAGGGTTGCCAACCACTAGACCAGGCTGCCCAGAGCCACATCCATCCTGACCTTGAATGCCTCCGGGGATGGAGTGTCCATAACCTCCTTGGGCAACCTGTTCCAGTGTGTTACCACCCTCTGTGTGGAAAACCTCCTCATAATATCTAACCTAAATCTCCCCTGTCTTAGTTTATAACCATTCCCCCTTGTCCTATTACTATTCACCCATGTAAACAGTCATACCCCCTCCTGTTTATACGCTCCCTTCAAGTACTAGAAGACCACAATGAGGTCTCCCCGGAGCCATCTCTTTTCCAAGCTAAACAACCCCAGTTCCCTCAACCTTTCTTCATAGGAGGGGTGTGCCAGCCCTCTGATCATCTTAGTGGTCCTCCTCTGGACCTATTCCAAAAGCTCTGTGTCTTTCTCATGCTGAGGGCCCCAGGCCTGGATGCAGTACTCCAGGTAGGGTCTCACAAGAGCTGAGTAGAGGAGGATAATCATCTCCCTCTCCCTGCTGGCTGCTCCTCTTTTAATGCAGCCCAGAACGTAGTTGGCCTTCCAGGCTGCAAGTGCACACTGCTGGCTCATGTCCAGCTTCTACTCTACCAGGACCCCCAAGTCCTTTTCCACTGGGCTGCTCTCAAGGAGATCTTCCCCCATTTTCTATAAATACCTGGGATTGCCCCGGCCCAAGTGCAACAACTGCACTTGGCCTTGTTGAACCTCATTAGGTTCTCATGGGCCCACTTCTCCAGCCTGTCTAGGTCCCTCTGGATGGCTTCCCTTCCCCCTACTGTATTGACTGCACTGCTCAGCTTGGTGTCATCTGCAAACTTGCTGAGGGTGCACTCAATGCCATCATCTATGTCACTGATTAAGGTGTTGAAGAGCACTGGTCCCTGGGGGACACTACTTGTGACTGGCCTCCACCTAGACATAGAACCATTGATCGCAACCCTTTGGCTGTGACGAGCCAACTAATTCTTAATCCACTGAACAGTCCATCCTTCAAATCCATACCTCTCCAATTTAGAGAGAAGGAATGCAGGAAAACTGCTAAGTGGCTCAGTTAGCTACCACAAGTTCTTATTCTCTTCTTTTGTTGTTTGAACAGACCTGTGTGTAATCTCTGTCTGCATAGGGAGCTGTTTCACACTGGGAAGACAACCTGGTATAGCCTTGTTCTCCAAATTCTTTGCCTGGGTTTAGGTGAAGTAGGCCCTTCTCTGAGGACCTGGGGCCATCCTCTGCCTTCAGACAACCCTGTTTGGGCAGGGGTGGAATAAGAGCTACAGCTAAGGATGGAGCTGCTGCATAGGGCTCTGTGGAGGCTTTTAACCAGCAGAGATCAATGGGGGACAGTGCTTACTATACTACAGGGATGCTAGAGGTGCTGGGCAAAAGCATCTCTGCTCGTGTATTTCCCAGCTGTATCCTCTGCAGGCAGGTTGCTGCTGCATTGCTTTCCCCTTTTGCTGCAGCGTAGGGATTGCGTGGTCACCAGCCCTGTGAGACTGCCCTGGAGAAAGGGAACGGTCTGCCTGTCCTCTCTCCTCTGCCACAGCTCAGCAAAAAGCCTCTCAGTCAGTGCCCTGCATCAGTTTTTGTCAGTGTGTGACTCCGATACTTGTGACTCAGAGCACAGAAGAAAGTCTGCAGACACCTTTGGCCACACTCCTCTGTATTTGCAGGAGTATTCTGTAATGCATGAATCTTCACAACTGGGTCTAATCCACTTGCTCTGTGGGCTGGAAATGTGCAAATGATGGCTACTTGCCCCTTGTGGAAGAAGCCCCAAGACCAATCTTATGGCTGCAGAATTCCCTGGAAAGGTCATAAGTATCTAGACTCAGAAATCTTTCCGAGGTGGGTTCTCTTTCTGCTAGTGGGAAAACTAAGATGGGGGTAACATCAGAGTAGCTGTCCTATTTCAAAACAGAGCTGGGTGCAAAACTCAGGTGTCCCACCTTTCTACCAGCACTCTGCCCGCAAAGCTCATCATTTAGGCACATGGCTTGAAGCACTCAGACCTTTGTGTTTCATTACCCTCACATGCCCTTCTGTTCTGCTCTTTTTGGCAG
Seq C2 exon
CATATCCTGTCATGTGCCTGCTGCCCAGTGCTCACGGCCCCTGTGCAAACTGGACCACTCGCTGGTACTTTGTGACTGTTGTTGGAAAGTGCAATCGGTTTTGGTATGGTGGCTGCCATGGCAATAAAAACAGCTTTGCCTCAGAGGAGGAATGCATGAGAGTGTGTCATAGCTCTGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009315:ENSGALT00000015156:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001418=Kunitz_BPTI=WD(100=86.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]