DreINT0110374 @ danRer10
Intron Retention
Gene
ENSDARG00000069934 | parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:ZFIN;Acc:ZDB-GENE-070912-387]
Coordinates
chr9:20686546-20686894:+
Coord C1 exon
chr9:20686546-20686626
Coord A exon
chr9:20686627-20686813
Coord C2 exon
chr9:20686814-20686894
Length
187 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
GTGCGTGTGTGTGTATATAGTTC
3' ss Score
5.56
Exon sequences
Seq C1 exon
GCCACATTGTTTGGTGATTTGAGTGGGCAGGAGATCAAAACAATGGTTTCCACCACAGAACTACAGAAGACGAAGGGAACT
Seq A exon
GTGAGTGAACGTCTGAAATACTTTGTGTAATCTGAAACGACATAGAGTGTTTGAGGATTATGTGCATATGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGCGTGTGTGTGCGTGTGTGTGCGTGTGTGTGTGTGCGTGTGCATGTGTGTGTGTGTGTGTGCGTGTGTGTGTATATAG
Seq C2 exon
TTCCTTCACAAGTTAACAGCAAGAGCGATCATCAGAAACTATGAAGATGGCATTCTAGGCAACAGTGAGGCAGAACATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069934:ENSDART00000145111:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACATTGTTTGGTGATTTGAGT
R:
CTCATGTTCTGCCTCACTGTTG
Band lengths:
162-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]