HsaINT0120514 @ hg19
Intron Retention
Gene
ENSG00000102699 | PARP4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:HGNC Symbol;Acc:271]
Coordinates
chr13:25017788-25020899:-
Coord C1 exon
chr13:25020819-25020899
Coord A exon
chr13:25017869-25020818
Coord C2 exon
chr13:25017788-25017868
Length
2950 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
3' ss Seq
CCTTTGCTGCTTAAACACAGATG
3' ss Score
5.12
Exon sequences
Seq C1 exon
GCAACTCTGTGTGCACTAATTCAAGAGAAAGAATTTCGTACAATGGTGTCGACTACTGAGCTTCAGAAGACAACTGGAACT
Seq A exon
GTAAGATTCAAAACCTAAACTATCAACCCATTGTTTGAAAGTTATGATTTTATATTTCCATATATAATGCTCTATGTCAAGCTTGTCCAACCCACGGCCCAGGGCAGCTTTGAATGCAGCCCAATACAAATTCGTAAACTTTCTTAAAACATTATGAAATTTTTTTTCAAGTTTTTGTTTTCAGCTCATCGGCTATCGTTAGTGTTAGTGTATTTTATGTGTCACACAAGACAGTTCTTCCTCTTCCACTGTGGCCCAGGGAAGCCAAAAGATTGGATACCCCTGCTGTCTGTACTTTGTTGTTTTCCTGTGTTGAAATTTCATTACACAATATGGAGATGGACTATATGTACAAATGAGTATACTTTCCTTCAGTTTCTAATGCAGCACTTCTTCATCTGGGGTAGTTTGGTCTAGGTATGTCTATATGGGCATCAGTGGGTGGCAATAACTGCAATTAAGTATGGCATTTATGCATGGAAATTTTGCTAGAGAGGTTCTCAAAGATGTTCATAACTCAATAAAGGTACATGCCACTGGCCTACTGATGCTATTTAGAAATACTAGTTATAATAATACTGGACTAAGAGTAGATCATATCGTATATTGAGGATGTGGGTTTATTTCCTTTTTTGATTAAAAGCAAATGAATTATGAAAGAAAAAATTCCTGTTTCCCAAATACACCATTTCTGGTTTCCAGATATGTGTTTTTCCCAACCAATTCTCTGACACCAGTTGCATGTCCTACAATTTAATTCAATTCTGACACTGGCCGCCTGGGGTTGGCACAGACCTCACAGAGTTGAGGGCTCAGTCCCACAAGACTGATTCCAACTCCAGACACCGGTAGCAAGTAGCAGGTCCCCAGGTTACCCACACTTCTGGTCAGCTCCAAGTCAGTGTTCCCACAACCCTTTCTCACAGAAATTTCTCAAATTTCTTACAGTAATTTGCTGTAACAGCTCACAGAACTCAGGAAAAGTTTACCTTAGTATTACTGATTTATTGTAAAGAATATTATAAAGGATACGAATGAACAGCCAGATGAAGAGGTATACAGGGTAAGGCCCAGAATAGTCCCAAGCACAGGAGCTTCTGTCTAACATACAGTTGGGGTGCACCATCCTCCTGGCACATGAGTGCTGACCCAGAAGCTCCCTGAACCCCTTTAGGTGGGGTTTTTAATGCAGGTTTCATTACAAAGGCCTGGTTGATTAAATCATTGGCCATTGGTGATTAACTCTCCCCTCTCTGGAGGTTGGGGAGTGGGGTTGAAGTCCCAGCCCTCTAATCATATGGTTGGTTCCCCAGCAACCAGCCCTCATTCTAGGGACTTTCTAAAAGTCACCTCATTAACATAAACTCAGGTGTGGTTGAAGGGTCCTGTTAGGAATAACAAATACATACATTTCTTATGTCTGTAGGGAAGTTCAGACTTTCCCTCTGAAGTTTCCATGTTTGGTCTATAAAATAATCCAACGATAGATTAACAGGGGAAGAGACATGCAGATGTCGTTACGTGTGCACGAGCCACGTGAGACTCAAAGAAGGGCCAGATGAGTGAAGTTTCATACCGTACAGAGGCGGGTAGGATTGTGGGGCTCCTGGGGGAGGTGGGGACAGGTTGTGGGAGGGTGAGGGGAAGAAACACGTGGTGAGCAAAGGCTTTCTTGTGATGCAGATGAAGTCTGGCAGGCAGCAGCCCTGAGAGAATAGAAGCACCTCTGGTAACGGTTTCTCTATCATCCCTTTAAAGTATCAGACTTTAGCCTCCTCTTCCTGGGAGTTCATCTTTCCTAAATCTGGATAAGGCAGATAAGGGGGTCTCAGAGAAAGCCTGTTTGCATCTGCTGTTTCCTTCACTGACATACGATTCCTCTGCAGATGCAAATATTCCCTGCAAAAGGACTGCTTTTCAGAGCTACTCCTATGTCTGCTGTCCCTCTGAATAGCATCTCAAAATATGCCAAAGAAGTCTCTTTTGGGGTGGCCTATTTTAGCTTTTTGCATATCACAATATCACAAATTATTACCAAGAAGTTTGTAATATTTGCACTGGTACTGAATCCACTGTAGTTTAGCCTTGAAAGTTCCTAGCCTATATATGCTATTTATGTAGTTTTTTTATTCAAAGGAGTATCAGTATAACCAGATAAATCATTTCCCAGACATTGCTGGGTTTTTTTCTCAAAAGTGCACAGCTTACTTTTCAGCACTAAATCGGTATCATTGACTTACTAGTTGCCAGTGACTTATGTATAGAACTTAAGCTCAATATTGCTTTAAAAATTAGATCTTTGTGGGTACTGATAAGGGAGAATAAATTAAAAGTATATTTTTAAAAATTAGATCTAAGGGGGAAAGAAGGTAAAATAATTTTACCTGGGAAGAGGTCGTTTTCCATAAAGTCACAGCAAGTTGTACTTCCTCTGTGAGAAGCAGCCTTATCAATGACAAATTACAAGAGTTGGAATGAAGGGAAGTTCCATCTCTCAGTTGTTGGAGAGGAAGCACCTGGTGGTGCACATTGTGCAGTCTTCACCCTTCAGAGTGCAGACCATGTTCACGGACGGGCATCCCAGGGCCAAGGTGGCTCTTCCCATGGTAGAAAAGAAGTTTTCAATTTTTTAAATAAAATGAATTAGCAAAATGGCCTTTTATAGAAAAAGCAAAACTCTAGGGACAGAAAGCAGATGAGGAGCTGCCAGGGCTTGAGGAAGCTACACGGGCACACAGGAACTTTTCAGGGAAAAGAGAATGTTCTGTGTCTTCACTTCAACAGTGGTCACACAACTGTATACATCCCTTAAGACTCATCAAACTGTGTATTTAAGAGGAGTGCATTTTACTGTATGCAGATTATACCTCCATTTTTAAAATGATGTTCTTTGCAAGTCTTATATTAGAAGCCATGTGAATATTTTTTTTCCTTTGCTGCTTAAACACAG
Seq C2 exon
ATGATCCACAAGCTGGCAGCCCGAGCTCTAATCAGAGATTATGAAGATGGCATTCTTCACGAAAATGAAACCAGTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102699-PARP4:NM_006437:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)