DreINT0110766 @ danRer10
Intron Retention
Gene
ENSDARG00000013615 | pbx3b
Description
pre-B-cell leukemia homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-000405-3]
Coordinates
chr8:33931385-33934337:-
Coord C1 exon
chr8:33934260-33934337
Coord A exon
chr8:33931475-33934259
Coord C2 exon
chr8:33931385-33931474
Length
2785 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTG
5' ss Score
4.41
3' ss Seq
TTCTGTTGTGTCCTCTGCAGGTG
3' ss Score
12.38
Exon sequences
Seq C1 exon
GATTCCAGATGAAAGATGAAGAATTTCAGCTGGATTCTGCAGAGAACAAAAACACTCTATTAACCAACATGTTCACTG
Seq A exon
GTACTGGCCTTTTCCATAAGCTTCTTATTGTCCTTGTCATTGGCATATAATCCCCTTTATGAACTCGTCCACTAGAGTAGTATTAGGTGTGAACCATTGTGGAAAACCTAGACTTCCAACTCCATACACCATCTCTGTGCCTTGTTGTGATTTCCCCCATTTGATTTGGCTTTTTTGGTGACCCCGACGTGCTCCTTTAGAGTTTTAATGCAACTAGACCGTCATCCCCATCCTTGTCCTTTCATTTCTTCCTTGTTTCTTTTGCTGTCCTTTTGTTGCTTGCTTTCCTGGCATCACTTCCTAGTGTGGCGTGTGTTGTGCGTATGTCCTCGTACACTGTGTGTATGTGTGAGCCTGTGATAGCCTCTCTTTCTCTTTCTCATCCTCTCGTTATTCAGCTCCTTACATCTTTCCTTTCTAGGTTCGTCAGGTTCTTTTAACCTCCCAAACTCGGGGGACTTGTTCATGAGCATGCAGAATCTGAATGGGGATTCTTACCAAGGGGCACAAGTCGGAGCCAATGTGCAGTCACAGGTAGGCGCTACGCACAGGAACTGGGGCTGTGAACCAGAGCAGACCTGTCAGCTAGCCTACCATCCACATTTAAACCTCAACCCCCCCTCCCCCTTAACATATAGACAATGATACAGATTTTATCACCCCTTCAACAATTAGTCTCATTATAGTCATGTAAGATTAATAAGTAGTGTGGATATGGATGGATCCTTCACATTTCCAGTCTGGAACCCCCAACCAAATTACCATATCGCAGCCTATAAGAGGCCCATCTAAGTAGACACTCATTATTTACAGCAGTATGCTAGAATATTGATCCTGGAGCAGACCCCATTTTGTAGTTGATGTTGTGAATGCATTTTGGCTCTGACTTGAGCTCTTGGGTTGGTATTGGTTGTATGGTACTGTTCTTTCCTCCAAACCTCTATATCCTTTTCTCATTGTGATGTTTCCAGTTCTCCATATCTGCATATGCTCATTTCATCCTTGTGCTGAAGACACCATTTGAAGGAGAGAAAGAAAATGATCTAAACATTTCCTAGATTCCTATTATCTGCTCATGCTTCTTTAATGTATTGTCACCAGTGTTAGGTGTAATTACTTACAAAGTAAATAGTTACTGCAATTAAACTACGTTTAACATGAGAAAGCAAATCAAGGGATTACTATTAATGTTTAGGTCAGTTAATCAGTAGTTTACTCATACTTGCATAGATACTTTATTTACATTCAGCAAATTATTGTAATTTTTTTGTTATAAATATATATATATATATAATTCTATTGTCCAACTAAAGAACATTAAGTCTGTTTAATTTGCAAAAATGTATTGAGAAGTTAGTTCTTGACAATATATGATAAAAAAATTAAGAGATCCACAATAATTGTGTGTGTGTTTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAACTTTTTATTTATTACAAAAAAAAAAATTACTAATGTTTTGCTTCTTACACTTTACATACCTGAAACTTACCAACAGCACTTATTCATTGTTGATCTTTTAGTTGTGTAAATTGCTTCCTTGTCCTCATTTGTAAGTCGCTTTGGATAAAAGTGTCTGCTAAATGACTAAATGTAAATGTAAATATTTCCTAAATTATATTTACCATAGCATGGAAATATTCACAGTATGTCTGATAATATTTTTTTTCTTCTGGAAAAATCTTATTTGTTTTAATTTGGCTAGAATAAAATCAGTTTTTAATATTTTTTTTAAACCTTTTAGGGTCAAAATTATTAGCCCCTTAAAGCGTTTTTTACGATAGTCTACAGAACAAACTTTATGTTTTGGAATGTGTTGAAAAAATCTTCTCTCCGTTAAGCAGAAATTGGAGAACAAATAAACAGAGGGTTAGTAATTTAGGGGGGCTAATCATTTTGACTGGATTTCTATATAATGATACATTTTAACTAAAGAAGTATGGAATTATCTGACAATTGTACACGCATAAGAAACAATGAATTGCTTTAGAAAATAAATGTCGATAAATACAAACGGTTCATGTTTTGATACATATATTTAAAATGAAAGTGTCTTTAAAACAAATCGAAAATGTCCTCTTTGACTCAAATTTAAACAATTAAGAGTTTAATTTCTATTGTCTATGCAATGTAATTCATGTGGAATGTTAGTCGTGAGTCAAGTAATCAAATTACATTTGAGTAACTAAGTTACTTTTAATTAGAAAACACATTTAAATACAGTTTTAATAATGTAATTAGCAATAACGACTTACTTTTTTTGAAGTAACTTACCCAGCACTAGTTGTCTCAATCTATATTCTCCTCCAACTGTTGTCATGTGTGAATATTTTTGTGCTTTGTTGAAATTTCCCTATCATAATTATGCCATTCTTTCTTTATGTATTTTTTGTTTTTTTGAACTCTGTGTTGAACACCAGAAACCTTTAGAGAGGGGAAACACATATGCTGTCTAAATGTTGCATTAAACCACATATGTATTCCTAACTTCATCCGGCTGGATATTCCATTTAGTATGATTCATTTAGTAAACCTCAGAGCCATCTTTTTTCGTTGTTGTTGTTCTTTTTTTCTTTAAACATCAGTGCCTTTGTCCGTTTAACCACACATTTCTGTGTTGATGTTTGCACGTGTTTCTGAAATGCAGAATGTTGACAAGCTTGAATTTCTGTTGTGTCCTCTGCAG
Seq C2 exon
GTGGATACCCTGCGCCATGTTATCAGTCAGACGGCAGGATACAATGATGTCCTGGGGGGGAATCCCATGTATAGTCCACATGGCTTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013615:ENSDART00000105204:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.491 A=NA C2=0.443
Domain overlap (PFAM):
C1:
PF0044324=UCH=PD(10.4=92.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]