HsaINT0120873 @ hg38
Intron Retention
Gene
ENSG00000167081 | PBX3
Description
PBX homeobox 3 [Source:HGNC Symbol;Acc:HGNC:8634]
Coordinates
chr9:125960684-125963101:+
Coord C1 exon
chr9:125960684-125960849
Coord A exon
chr9:125960850-125963011
Coord C2 exon
chr9:125963012-125963101
Length
2162 bp
Sequences
Splice sites
5' ss Seq
CCGGTGCGT
5' ss Score
9.74
3' ss Seq
TTGTTTTGTCTCACTTCTAGGTG
3' ss Score
12.31
Exon sequences
Seq C1 exon
GTATCCAATTGGTTTGGCAACAAACGAATCAGGTACAAGAAGAACATTGGCAAGTTTCAGGAAGAAGCCAACCTCTATGCTGCAAAGACGGCCGTGACAGCTGCACACGCAGTAGCAGCAGCTGTGCAGAACAACCAGACCAATTCGCCCACCACACCAAATTCCG
Seq A exon
GTGCGTACTGGGGGCTCGCTCCCCAACTGGCCCAGGCAGCCTTATGCCACAATGCCCTGTCCCACAGGCCAGGAAACAAGAGCCATACTGAGGACAGAGTGGACTTAAAAAGGAAGATTTATGTTCAAATGCAGGCTTGTTCTTGAGATGGGTGAATGAGTGGAAGGTCAGAGCCTGTAAACCCACTCTTCACAGTGAATGCCACTCACTAGTAGATTATGGAAGTTTTACAATTAGTAGTGGCTTTCAGTTCAGTAATTAGGCAGAGTGCTATCGCTCATGACTATTTTAGCTATTTCTTTCCAGATACCACTTTAGGGTCAGTAGTGGTCTGTGGAGAGTGAAATAGCAGAAGTGGGAAATGCAGCAGTTGCTGTGTGTGAGGAAGCTGGAATGCTGGAGGGAAGTGCAGCAGTGCTTTCTGCCCAGCACCGCTGTCCTTTCTCTGCCTTTCAGCAGCACTGTCTGAGCGGGGCTGACGGCATGCTCAGCAGGTGGCTAGCTGTGAGGGTTATGGTGCTTAATACATGCATGCAAGATTCTTGGATCCTCGTCCGGTACATTTTGGCTGCATTTTATGTGACGTTTGTGAGGGGGTTAGAAATACTTTAAAATTTCAGGGAACTTGAATAACAATGAAAGATGTGCAGCTAGTCCAAACAGATGGACTTCAGTAGCAATTCCAGGGGCGTTTCTGAGAAGGTCTCTTAGCTATATCTTTAGAAGTTCAGAAAGTAGGGGGGTTTTTGTTTGTTTTGTCTTGTCTCCTCACCCCCCAGTTCTTTTTAATGGCACATAAAAACAGATGAAAGGAGAGGGAGGTATATGCATAGCGAAGAAAGAGCTCCTGGAAAAGTCTCTTCTCTGGGTGGCTGTCCACTGTGACAGCCATGTTGACAAGCTCGTGTAATGACTAAATCCTGGAGATGAGTGGAAACAAGGGGAAGGGTCCAGGCCAGCTGCTGGGTGTTTTGGTTTATTTTTTCTTTTTAATTTATTTTGATTTGTCTCTTTGTTTTTGCTTTTGTTTTTTAAGTTTGGGCTTCCCCACTGATGGGACTTCTCCTAGATGTGGAGTGACTCACAGGACCCAACTCTCTGGAGTTACTCTCCATCCTCTTAGATCTGGAAATGCTTTATGTTGTGCACAGCCTTTCCCTTCTGTACTTTTTCTCATCTCCCTGCCTCTAGGTCTTTGAGGATTATGTGTGTAGCTCTCTGTTATTCAGCTACTTAACTCTTTCCTTTCCAGGTTCTTCTGGTTCTTTTAACCTCCCAAATTCTGGGGACATGTTCATGAACATGCAGAGTCTGAATGGGGATTCTTACCAAGGGTCCCAAGTCGGAGCCAATGTGCAATCACAGGTAGGAGAAATGCCCCAGTGGGGCCTTTCTAGCAGGGTAGGGTTTGGGCTCAAAACTCCTTCCTCTGACCCCATGGAAGTGGTCTACACATCCATGCAGAACCTGTGCTGGGTGCTTCCAACCAGGACCCATCTGCCCCACCATTTAATTTAATGAGAAGTCAAGTGAACAGTGACTTGTGATGATTCAAACCTGATAAACTTTGTGAATGCATTCGGCTCTGGCTTGAGCTCATGGAGAGGGGTTGGGTGCATCTTACTTTTGTCACAAAATAGAACAGAAAAATTGAGTGTGCCAGTGTGTATATGGTTTAAGAACATGTTGCTGTTTCATTTCTCAAGTCAGAGTACAAAAACCTGAGTTCTTAAATTATAACTCTATAATTTCTACTCTTTTCTTGTCCTCTTATTTGAGAACAGAACTATTCATATAGTTTTTATACATCTAGATGTATGTGTATGAGACATAGAGAAAGTGAGAGAAAGAGAGTTGAGATAATTCCATATACACAATTCTAAGTAGGCTTTCACCCACAGCCACATCCATTTGGTTGCTGTAGATGGAAAGTTGCATTGCCATGAAGATGTTATTGTTTGGCTGGCATGAAAAACAAAGATTTGTGAGTTTAAATATGCAAAGAATGGTTGAAATTCTGCCAGTCACATTTGATTGATAAATTTGTCTTTCATTGAAGATGTTAAACCCTTGTGGCACACATAATTCAAATTATTTCCTTTTGTAAGTGATGACGTTTTAATAGATTTGGGATGATGAATTTTGTTTTGTCTCACTTCTAG
Seq C2 exon
GTGGATACCCTCCGTCATGTTATCAATCAGACGGGAGGCTACAGTGATGGCCTTGGAGGAAATTCACTGTACAGTCCACATAATTTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167081:ENST00000342287:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.339 A=NA C2=0.822
Domain overlap (PFAM):
C1:
PF059206=Homeobox_KN=PD(16.4=17.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development