GgaINT0126292 @ galGal3
Intron Retention
Gene
ENSGALG00000000972 | F1P3W1_CHICK
Description
NA
Coordinates
chr17:10542831-10543841:+
Coord C1 exon
chr17:10542831-10542943
Coord A exon
chr17:10542944-10543751
Coord C2 exon
chr17:10543752-10543841
Length
808 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTGTTTCCTCTTACTTTAAGGTG
3' ss Score
9.62
Exon sequences
Seq C1 exon
GTTCTTCTGGTTCTTTTAACCTCCCAAATTCTGGGGACATGTTCATGAACATGCAGAGTCTGAATGGGGATTCTTACCAGGGGTCCCAAGTCGGAGCCAATGTGCAGTCACAG
Seq A exon
GTAGGAGAAATGCCCCACAGTAGGGCCTTTCTAGCAGGGTAGGGTTTGGGCTAAAAATTCCACCTTACTCTGGCTCTATTAAATGGTCTGTGCCTCGCTGCAGAGTGGAGGCTGCATATTTCCGAACGTGACCTATTCTTACCCCGGCACTGAATTTCACAAATATGAAGGAAAGAGTGATTTTTTCTGATTGAAACTTGAAGCTTTGTGAATGCATTCGGCTCTGGCTTGAGCTCATGGAATGGGATTGGGTGCATCTGACCTCCATGGACACTGTAAATCCAGTGAATTTTCTTTCTTTTTTCCTTTTCTTTTTTTCTCTCCCCCCCCCCCCCCCCCTTTTTTTTTCCCTTAATGTCTTTGTTTCATTTATTGGACAGACCTTTATTTGTGTATTCATTTGAATGTCAGAACACATTGAACTGAGCTATTAAAATACAAGTTATTCTCAGTCCCTTTTCCAGTCCTTTCACACAGGGCTTTATATGCTCCATAATCTTTTCCCATACATACAAACACGTCCAAACATATGAGTATGCACAGCGCTTTGCTGCAGACACTTAAGAAGGACCTGCGGGATGCACTGCTGTGAGGAAGTTATTGTTTGACTGGTGTGAGAAGCAGAGATGTATGGCTTTTAACATGCAAGGATTTGTTGAAATTCTGCCAGTCACTCTTGATTGATAAATTTGTCTTTCATAGAAGATGCTAAACCCTTTTGGCTCACATAATTCAAAGTGTTGGCTATTGTAAGTGATGATGTTTTAATAGATTTGGAATGATTAATTTTGTTTCCTCTTACTTTAAG
Seq C2 exon
GTGGATACCCTGCGTCATGTTATCAATCAGACGGGAGGATACAGTGATGGCTTGGGAGGAAATTCACTGTACAGTCCACATAATTTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000972:ENSGALT00000001436:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=NA C2=0.967
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTTTTAACCTCCCAAATTCTGG
R:
AAATTATGTGGACTGTACAGTGAATT
Band lengths:
190-998
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]