DreINT0111634 @ danRer10
Intron Retention
Gene
ENSDARG00000003449 | pde10a
Description
phosphodiesterase 10A [Source:ZFIN;Acc:ZDB-GENE-040426-1115]
Coordinates
chr13:4485144-4486720:+
Coord C1 exon
chr13:4485144-4485224
Coord A exon
chr13:4485225-4486631
Coord C2 exon
chr13:4486632-4486720
Length
1407 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GTTTTTCCCCATGTTCTCAGGTG
3' ss Score
9.21
Exon sequences
Seq C1 exon
GGAGATGAAATGAAGAAGATTGGAATGCAGCCTATCTCCATGATGGACAGGGATAAAAAGGATGAGGTACCCCAGGGCCAG
Seq A exon
GTAAATGAGAACTTTCTGTCATTATCAATCTCCTTAACAGGCTGCCTAGTAAAATGTTTCTTATTGCATGCTTTAGAATAGCTTAAAGGGCCGTTCACACTAAGGACCGTAACTATAAATGTTACAATAACGGTCACATTCTACAATGAGGTTTAATTAGTTCATGAGGTTTAGTCTATGTTGTATCATGTACATCATTTATTAATAGTTTAACATTTAATAATGCAATATTACCATTCAAATTTGTGCTAGTTAATGCACTTTGAGTTAAGAGGAACTAACAATGAACAGCTATTTTTCAATTCACTAATGGTAAAGGGATAGTTCACCCACCAAAAAGACATCCTATTTAAAGGTGCAGTAGGTGATTGTCTTAAGAAACATTTGTTATTGTGCTGGTTGAAAGTCTCTTCACAGTCCAATAGTAATGATCAAAGTAAATGATCTAAATGTATTTATATGTATATTAATATTCTGGTTAAGGCATAAAACTAAAAAATGTTCATCCAATTAAATATTGTAGGGCCGACATCTCCCATAGTTCCGATAAGTAGCTCAAACTGTCTGTCAACAAATGCAGATTGGGCTTTTGTGCATCTCTGTTCACACATATCCGCCATTAGTCACAGTCGTCACAGTCGTGGCAAAATCAAATGCTGAATTAAAACTTTTTAAACTTCTGAATCAGTATCGGAGTTACTTTTGCACAACACCATGGCTGAAGTATTTCTGTTAGACAGATAATGTTCTGTTGTAAAACTATTTTAGCTTCACGCAGAGCTGATGTAGAGTGTGTTGTGTTATGAATGGGTTATGTGCACAGATGTGTTGTTCAGCCTCTGAAATCTCCCAGTGATAGACTGAAGTGACTATTTTCAGTTTCATAAGGGACCTTTTACAGCATCGATAATGTCGATTTTTATTTAGTTTAACAACAAAACATCAGTAAGCAGCACCATTCCACCTAGCCTGCTTTACTGAGCAGAAGTTGCTTTTATATTCACATTGGGTTATTTCTGAGCAATGACATCCTGTGACGTGCTACCTATATTGTTTACCGCTACGATATTCGCTATGAAATAGCATGTACGTGTGGCTTAGTAATAAGTGAAATTCCTGCACGCCGCTGGCCAAGCACTATGACTTGAACTAGTGGGTTGTCTGCTGTCATGTCGCGGTGCGCGCGTTCACGAATTCTGGATGCGTGGCTTTAAAACACAGTCCCTCCCCTGCCGTCCAGAGCTAACATATTAACCGATTAACATTTTGGCAGATCACCTACTGCACCTTTAACTGTTATGTTTAGTTGTAAATCCATCATTAGGATAGCTTTTATGTTTTGTTGTAGAGTAAATGTTAAATGGACGTTTAGTTATACTATAGTCCTGTTTTTCCCCATGTTCTCAG
Seq C2 exon
GTGGGGTTTTACAATGCAGTGGCTATTCCCTGTTACACCACTCTGTCTGAGCTGTTTCCTCCCTCCGTTCCTTTGCTTGAAGCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003449:ENSDART00000144312:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.284 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(11.1=100)
A:
NA
C2:
PF0023314=PDEase_I=PD(12.1=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]