RnoINT0108638 @ rn6
Intron Retention
Gene
ENSRNOG00000011310 | Pde10a
Description
phosphodiesterase 10A [Source:RGD Symbol;Acc:68434]
Coordinates
chr1:52363289-52365254:-
Coord C1 exon
chr1:52365174-52365254
Coord A exon
chr1:52363378-52365173
Coord C2 exon
chr1:52363289-52363377
Length
1796 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TTCATTTTTCCCTGCCGCAGCTT
3' ss Score
7.99
Exon sequences
Seq C1 exon
GGGGATGAGATGAAGAAGTTGGGGATACAGCCCATCCCTATGATGGACAGAGACAAGCGAGATGAAGTCCCTCAAGGACAG
Seq A exon
GTATGCAGAACGAGAGCCATCATGACATGGCTGTCCATCTGTCTGTCTACTGTGTATCTATGTATTAGATGTGGTGGCTTTTAACCCTCCACAGAACTTTCTGGAACACTGGGCTCCCTGTTAACTGTCTTCTGTCTGGCCCCTGCACTTGGTGTGAACCCGTTGAAGTCCCCACCCACTCTAGGGGTGTAGCCACACACACCCCACCCCCAGCCGAGTCTTACATTCCGTTATTAAATTATTTGAAATATGTCTTGTCACGTAGTGTAAGGAAGGGATCCAACAAAGTCTTCCCAAACAGTTACAACACACTCTGTCCCAGTAAAGATTTTGTTTTAGAACTTACATTCAGAATAGTAGTTTGCTCTAAAATAGATTGAGCTTTGCCAAAAGAAGTAACTTCTTTTGGTAGCCTGTGGGGTTTTTAAATATCTCCGAGATGCACAAAATATTTTACCAGTTCATCTAAATTTTAAATATGCATATTGTGAAGTAATTTTGTCACAACAGTGAAGTGTTCTGCTCCCCAGTAAGCCATTTTTTTTTCTTGGAATGCTCCAGCCCAGTGAATCCTTACTAAGGTTTAAAATAAGAGAATGCCTGCGTCAGCTATGAAACTAAAAATAAGCCCACTGTGCTGGTTCATCCCTGTAACCCTGGCCCCCCAGGAGCCTCTGGAGGGGAGGCTCATGAGGGCCAGGGCCACCTGGACTTCAGACGGACTTCACCATTGTCTCAAACTTAGCTTCAAAGCGGTTCAAAGTGGAAACACATGAGCATTGCTCTAGCATGAAGATTCTGTCAGTAACTCTAGCAGGAGAAAGCAAGTGGGAGCCATGAAGAATTCCTGCTGCTTCTCCTCTCCTACGCTTCTAAAGACGTTGCTGAGCTCACCTAGGGAGCAGATGGCTGCCACTTTGCCATCCATTGGCTTGTCATGAAGAGGGGCTCACCAGGGGAGGACAGTTACCTGGGCTCTGCTTGGTCCCTCACCAATCCACATCTGCCCTTCACTAGAGCAGGTAGGGTAACATCAGGAGTTAGAGCTGTGGAGACTCATAGGTTGAGAGAGAGAGCTGAGCTAGGAGGAGAACTTCAGTGAACACCCTGAGGTCTGTTGAAGGGTACAAGTCTTGGGGGAGGGTGAGGGTTTGGCACAAGACTAGAGGTCATAGAAGAAAACCAGAAACACATCGGCTGCCCCTGAACGCTAAGCTGGAAGAGAGTTGTGCTGGTGCCAGACTCTGAGCCTGACTCTGACATGTCCCCCAGGGCAGCGTTAAGTTAATGTAGCTTCTCAAATAGGCCTTGGATTCAAGCCTGAGCCAGGTGAATTTAGAATCTTGTTTAACTCGCTGAAGCTTTGAATTCCACGGGTGTAAACTGTAGTGGTGTGTTAAGGAATTGAGTATGTACACAGTACACAGCAGGAAAAGCACACGACACATACACAGGGCACAGAGCACACAGAACACACAGGGAACAAAGCACATACATAGTGCATAGAGCACACATATCGCACACACACACACACACACACACACACACAGAGCACACAATACACAACAGAAAAAGCACACAATATACAGCAGGAAAAGCACACAGCCCATACACAGTACACAGAGCACACAGCCCACAGCACACAGAACAGCACATAGCACAATGCAGAAGACAGAGCACACGGAAGAAACAACACACAGCAGGAACAGCTGACTTCATACTTAAGGGTCAGGGACAGAAAGGTGGAGAATGTCAGCTTTCTAACAGTAACATCCTTTCATTTTTCCCTGCCGCAG
Seq C2 exon
CTTGGATTCTACAATGCTGTGGCCATCCCCTGCTATACCACCCTGACGCAGATCCTCCCACCCACAGAGCCTCTGCTGAAGGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011310:ENSRNOT00000043474:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(11.0=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]