DreINT0111781 @ danRer10
Intron Retention
Gene
ENSDARG00000051915 | pde5ab
Description
phosphodiesterase 5A, cGMP-specific, b [Source:ZFIN;Acc:ZDB-GENE-060824-4]
Coordinates
chr7:57299583-57303563:+
Coord C1 exon
chr7:57299583-57299708
Coord A exon
chr7:57299709-57303468
Coord C2 exon
chr7:57303469-57303563
Length
3760 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TATTGTGTTTTAATTAACAGAAT
3' ss Score
8.06
Exon sequences
Seq C1 exon
AGTTTGTGTCAGTGGATCTTAAGTGTCAAGAAGAACTACAGAAAGAATGTGGTCTACCACAACTGGAGACATGCCTTCAACACCTCCCAGTGCATGTTTGCTGTGCTGAAGTCTGGCCGTGTTCAG
Seq A exon
GTCAGTGATAACAAATATCACAAACCCAAGGGTCACTTCAGCAAGCTTATGGCGTACGACTTCACCTTCAGTTCACAAATAAGTAACCATGCTGACACCTATTAACACATTGTGTATGTTCCCTGTAACTAAACAGTAACTAGGACAGAAAACAACTAGGTACAATTTTATCACTTTAATGTATTAATACTTGGATAAAAAACATTTTGTTTACCTTCATTTTAGAGAAATTGTATATTTGAAAACAAAAGAGCCTTAGACTGTTCTCTTTTAAGGAGAGATCGTTTTATAGTTATAAGTAAAAATGAAACTGGCAGAACAGTTTTATTGTGCATTACACTATAAATGTCTTCTGTTGTTTACAGTGGTAGTTAATCATTTGCATTCATACACCTGCTTAGGCTGCTAGAAAATGCATGCTTTCTGTTTGTATTTTATTCATTTTTTATAGTAAACTCTAACATTGACTTTATGTTAATGTTATCAACTTTTGCAATTACTTGCAACTACAAATGATCACTGTGAATGTTTTGTTTACGGCTAGTGTTTTATGAATTGAGAACTACACTCATCGGCCACTTTATTAGGTACACCTTACAAGTACCGAATTGAACCCACTTTTGCTTTCAGAACTGCTTTAATCCTTCATGACAGATTCAACATTGTACTGGAAATATTCCTCAGAGATTTTGATCTGTGATAGCATCACGCAGTTGCTGCAGATTTGTTTGCGGCACATCCATGATGCGAATCTCCCATTCCACCATATCCCAAAGGTGCTTTATTGGATTGAGAACTGGTGACTGAGGCCATTTGAGTACATTGAACTCATTGTAATGTTCAAGAAACCAGTCTGAGATGATTCATGGTTTATGATATGGCGCGTTATCCTGTTGGAAGTAGCCATCAGAAGATGGGTACACTGGCCATAAAGGGATGGACATGGTCAGAAACAATACTCAGGTAGGCTGTGACATTGACACAATGCTCAATTGGTACTAATAGGCCCATAGTGTGCCAAGAAAATATCCCCTACACCATTACACCACCACCACCAGCCTGAACCATTGATACAAGGCAGGATGGATCCATGCTTTCATGTTATTGACGCCAAATTCTGACTTTACCATCCAAATCCTGCAGAAGAAATCGAGACTCATCAGACCAGGCAAAGTTTTTCCAATTTTCTATTGTCCAATTTTGATAGCCTGTATGAATTGTAGCCTCAGTTTCCTGTTCTTGGCTGACAGGAGTGGCACCCGGTGTGATCTTCTGCTGCTGTAGCTCATCCGCCTCAAGATTGGGTGTGTTTTGCATTCAGAGATGCTCTTCTGCATACCTCAGTTGCAACGAGTGGTTATTTGAGTTTCTGTTGCCTTTTTCTCTTGGTCAGACCATTCTCAGTAAATCCTAGAAATGGTTGTGCGTGAAAATCCCAGTAGATCAGCAGTTTCTGAAATACCCAGCTGGCACCAACAACCATGTTCAAACCAACGTTCAAAATCACTTAAATCACCTTTCTTTCACATTCTGATGCTCGGTTTGAACTGCAGCAGATCATCTTGACCATTTGTGTTAATGTGTAGTTAGACAGTAGTACCTAATAACGAGGCTGGTAAGTGCATAAGTAAAGCCTTGTTTTGGCATTCCAGATGACTTCTAATTAGACATACATATATGAATTTGTTTTTGGATGGCATGGATTTTTTGGGGAACACATTATTTTAAAGTGTTCTTGTTACAGTGTAGCAATTTATGTATCTGCTGAGTAATATTAAAGTGTTACCCATACTGGTAACAGTTTACTTGATGGGGTGTTCATAAGACTGCCATTAAAGCTTTATAATAATGGCATGACATGTGTCATGAATGTGTATGAGATTTTGTGCATACTTATAACAACTGTCATTAAGGGCCCTATCATACACCCGGTGCAAGATGTGTAGGAAATGATTTATTGCTATTTTCAGAACAGCGAAACAGTAATTTTCACGTTTTGCACCACATCGTTTAAATAGCAAATCCGTTTGGTGTGCTGGTCTATAAAGGTGGTGTGTTAAGGCACATTGTTGGCGCATTGCTATTTTGAAACTGCGCCATTGACCAGAGCAGAATGAGTTAGTTATGCGCCTATGTGGTTTCAAACGCTTACACATTGTTCAATACACAGGATGTACAGCAATACACAACTATCTTTACATATGATAAAAATTAAAGGATTAAAATATTACAAAAATTAGTATTTACTACATAAATATAAAAACCTCTGCCTCCATGCCCTCTTCATGTTGGGGGGCTTTTTCAGTTTATTTATGACAATTTGCATTTGTATAATGTTATTATTATTATTAGCAGTATTATTTATTATATGCGAATTTATATTTGTTTTAATAAAAACAAGCTTAGATTTGTCCGCCTGTTGGGTTTTGGAGATGTATATATCACCATTTGGGGCATAAGAATAGGACTTATGTTTGGAAATTGCTCAGTTTTTTACCACATTTCATTAATATTGTTCATTTATTCGTTTGCTGAAAATTAGAACTGAATTTGAAAATAGTTTTAAAACAAATCCTTGCACTTACTGAACAAAATTAAATGTGTAGACTAATGGATGTCTTCAGTGGAGTGCATACAACATTGTTTCCTTATGCGTGAAAGTAAAGGAGTAAAGTAAAGAGTAAAAGTAAAGAGGCTCAATGGAGGAGGCTCGTTTCCCATGTAAATAGAAAATGTGTCATGGCACGACGCAACTGACTCTTAAAGAGAATGTGAGATGAGATTCTGATTGGTTTAATGCACGTTATACTCAAAACAAACCCATAACTCATTAAGAGAGTAAGACCATGCGCTGGACACGCCCTTAATGCTTTTGCGCCATGCGATTTAGACTTCGCGCCTAGATTGTTAAAAAAGAGCCCTTAGTCTCATCCCTTCGGTTATGACATTTAAATGCAAAAATGGCCTTGCTTGTTATGACAACTTGACAAACAAATACATCACAACCTGTTTTTGTCTTTTTTCATGACAACTTGCAATGACTAGACAACAAAACTTGTCATAAATCAGTCATAAAAATGGTTTTCATAGGACCATTAGAAATATGAATATATATATATATATGATGACTTTTATAACACCCTCATTATTTTTATTTTATAAAAAAATATTATGCAATATTAATGACGCTGTTAAAATTATCCACTGAAAATGAGATTCGAAAAATATTCATGACACAATTATAATGCATCATGACAATCCTGTTTATGACAGATTTATGACAAGGTATGTTGTCTTGGTAATATTAAGTTGTCATGACAAAGATGAAGACTGGTTATGATGCATTTGTTTGTCAAGCTGTCATCTAAAATGGCATAACTGAACAAATTATACTTTATAAGCATCATTGTCATAAGCATGCAAAAAATCGCATTCATGACATCCATGACATGTCAAGATTTTAAAAGTTTCATGACAGTCTTATGAACACCCCTGTCTTACTCATGTGCTTACTATATGGGTGTAACTAGAATGTCGGTGATGTTTAGATTGAATTGCATGTAATTATGTTTAATTAGTTGTAACTATGGTAATTACATGGAACAAATGCAACAAGGACACCTTAAAATAGAGTTTTACGATTATCCTCTTTGCAGTCTTGTCTTGTAATAATTTTTAAATGTATTGAATTTATCAGAGGATTTGGTGTAATGGCTGTTCCGGCATATGTTTAACCAAAATATTGTGTTTTAATTAACAG
Seq C2 exon
AATAATCTGAGTGATTTGGAGACTTTAGCTTTAATGATTGCAACATTGAGTCATGATTTGGACCACCGAGGGGTCAACAACTCTTACATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051915:ENSDART00000138188:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PU(9.6=54.8)
A:
NA
C2:
PF0023314=PDEase_I=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]