GgaINT0073929 @ galGal3
Intron Retention
Gene
ENSGALG00000011982 | PDE5A
Description
NA
Coordinates
chr4:56236698-56238938:+
Coord C1 exon
chr4:56236698-56236823
Coord A exon
chr4:56236824-56238843
Coord C2 exon
chr4:56238844-56238938
Length
2020 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
GTATTACTCTTTACATATAGAGC
3' ss Score
5.28
Exon sequences
Seq C1 exon
GTTCTCTGCAGATGGATTTTAAGCGTGAAGAAAAATTATCGGAAAAATGTTGCTTATCACAATTGGAGACATGCCTTTAATACAGCACAGTGCATGTTTGCTGCTTTAAAATCTGGTAAAATTCAG
Seq A exon
GTATGTTTTGCTGTTACTACATTAAGAACCTTCTGGATGAACAAATTTTGTAATGGTACATAGATCTGACTGCCATGTCAATAAGACGCTCAAAATTAGAGTATCACCAATGAAATCAAAGTTTTTTTTGCTGAAGACTTCTGGCTTTAGGTGCTTGCTTTGTTAAATTGTTGTCATGTTGTTATCTATTCAGTTTCACTTAAATCCTTTGGAATGATTGAGTGGATGCTCCCAATAGGAGTATCTCAAAAAAGTCACATACATCATTTTATATATATATGTTTTGCGTCAATGCTTATGCTACGAGCAAGTCTAAAAGCTGGGAAAGAAAGGGATCAACCCTACTTCAGAATGTTTCCTTCTAATATTCAGCAGGAATGTATTTAAGTTCATACAGAGTTGTCTGCAGTTGTAGACAAACAATAGAACATTTTTAGAAATAAAAATTCAAATGATAATTTCAGTGCTTTTAAACAATACTTCAGATTTCCACTTGAAAGGAAAACAGTAATTTTAAAAATCCACAGAGCCTCATTGTTATTTAATACAAACACTGAAGAACCAGATGATCCCCCAGAAAGAAAACTTGTTTTCAGAATTTTTCCAAAATAAATTTCCAATGGTTTTTTGTTTGAAAATGTTCCTGTCCATTCTGAATCAACATGTTTCTCAATTTGATTACAGACAATCGTTACTTGCTCGTTTATCCTATTTTACCATATGCACTTCTGAGAGGATAAAGTAATCCTATTTGTAGACCAAACACCAGAACCAATAATGACAAGGCATTCCCTGCCTCTACAAACTTTATCTCACTTAAAAAAAGACAAGGGGCACTGGCAGAGACAAAGGCATTCCCATTCCTTCTACATTAAAAAGAAACATGGTAGTTTTGCTCTGTGTACAGTACAGCAATCTCAGATGATTCTGATAGTTTGCTTGCTATTTTTGGAATCCTGTCAATCTCTACTGCAATTTTCATATGTATCTCTTTTCCTAACTGTATTGGATACCACTCTCATTTTCACATCCTAAATACTTGATTCAGAAATTGCATTGAACATAAGTTTCTCAATTTCAACTGAGAGGAGAAACAAGCAGTAGGACACATAAATGAAATGTAGAATCAGTCATGTCTAAACTGATTAGATGAAGAACATGACTAGAACGGGCTGCATTATCTAGAAAGCAGATGCAATCCACAGAAGCTGTATCTGCTTGAAAAAAAATTTTGATTCAGCCATACACAGAATTCAGCCCCTCAGCATCTGTACAGTGCTGTTTTTCAAATTCCTGTCATGACTTTTGTGCTTGCTATTCCTGTCCCATTAAAAATATGCCGCAAGAATGCTGTAGCTTTGTCTAGCCTCTGTTTGTCACTATTCAGGTTTAAAGAAATATTTTATCAATTTGTATTAAATAATATTAAAGATGAGGAATAGCTATGAAAGAGAAACAGTAGCCTCTCCACTAATCTTTGCTTGAGCTCCAGAATAAGCTCATAATAATGAATCAGATACTGCTTAATTTTGTTTTCCATGGGGTTTGAGCTTCTGTTAATGTATTTGTGCAGTGGATTGGTGAAGAGCATGTCATTTTTCCTTTCTGATTATTCCAAAGATGTGTACTTTTATACTGGTTTAGGGAATGTAGCCTAACTCCCTTGAGTTTATATAGAAGCTGAACTAAAAGTGATGGGGCCTGATGCTGTTTTTTTGCTATCAGATGATATCATACAAGTCACTGCGTTGTATTCTGCACCAGTTTCCTCATCAGTAATATAAGGCTAGAGGATGTTATTTCTTTCTGAATACTGCATTGACGCCTATGGAGAATGATTACTTCTGCACACCACAACTTCAGAAATAACCCCTTATTCTCAGCATACAGTTGTAGGTCTGTGGCCTCTTTGGGCCAAAGCTGTATCACCTACCTAGGTTAAAAACAAGATGGCAGATATAAAACGCGTGCAAAGAAATCGCAAAGCTAACTCACTTCTTGTATTACTCTTTACATATAG
Seq C2 exon
AGCAAACTGACTGACTTGGAAACGCTGGCTTTGCTGATAGCAACTCTAAGCCATGATTTGGATCACAGGGGAGTGAACAACTCTTACATACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011982:ENSGALT00000019550:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PU(9.6=54.8)
A:
NA
C2:
PF0023314=PDEase_I=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]