DreINT0111823 @ danRer10
Intron Retention
Gene
ENSDARG00000011671 | pde6b
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:ZFIN;Acc:ZDB-GENE-090421-2]
Coordinates
chr21:20331718-20332653:+
Coord C1 exon
chr21:20331718-20331827
Coord A exon
chr21:20331828-20332565
Coord C2 exon
chr21:20332566-20332653
Length
738 bp
Sequences
Splice sites
5' ss Seq
GAAGTCAGT
5' ss Score
1.02
3' ss Seq
TTCGTATGTTTTACGATCAGATC
3' ss Score
5.49
Exon sequences
Seq C1 exon
ACAGGCAAACTGAAGCAGTATTACACGGATTTGGAGGTGATGGCCATGATCACTGCCGGTTTCTTGCACGATATCGACCACAGAGGCACAAATAACCTCTACCAAGTGAA
Seq A exon
GTCAGTAAACTGCTATAGGTCCTGGTATACTTCAAACGAAATTGAAAAATGAATTGAAAAGACTTATTTTCTAACAAATCTGTCCAAAATTAAGTTTGTTTTGAGTTCATTTCAAAAGTTTAAATCCGCTAATTAAAACAGACTTTCGTTGTTTATTTGACTCATTGAACACCTTTGAGCTACCATTGGTCTTTGGCGATTATGCAATTGGTGGGACTCCACCTTCTTTCCCGATTTGTTTATTAATTGTGGTCTGACAGGGGACAAAACAACTACAACTACTACATCTAAAACAACTATATTTGGACAAAAAGCCCACCTTGTCATGCCATGTCTTTTCTATGAGTTTGTGCATACCAGCCATTCAGTGTCTGACTGCAGAAAAAAGAAAACAATGTAAAAAAATATGTGATTTTCAACAGTCACGCTTCACATGGAGAAGGCTGTTTGACAGATGTTTATACAATTGTTGTTCTCTCTTTTTTGCCACAATTGTTGCGTTTAGTGTTACATGCTAGCAGCGTAACACATTTACAACCCCACCTACTGCAGAATTGGAGTGTTTGAGTGTTATAAAAACAGTATTTAGCATTTAGACATATCTGTTTGCCGTCAAATAAAAATAAAAAAAAACTTTGAAGTATACCAGGGCCTTATTGCTACATTTATACTACCATTTTTACTAGTAGTCCTTGTACTGATTATAATTATCATCACATTCGTATGTTTTACGATCAG
Seq C2 exon
ATCCCAAAATCCTCTAGCCAAGCTGCATGGATCCTCCATTCTAGAAAGGCATCACTTGGAATTTGGCAAATTCCTGTTAGGCGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011671:ENSDART00000135816:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(14.5=100),PF0771711=OB_NTP_bind=FE(23.8=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(11.6=100),PF0771711=OB_NTP_bind=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACTGAAGCAGTATTACACGG
R:
TCGCCTAACAGGAATTTGCCA
Band lengths:
190-928
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]