GgaINT0066436 @ galGal4
Intron Retention
Gene
ENSGALG00000015373 | PDE6B
Description
Phosphodiesterase 6b subunit [Source:UniProtKB/TrEMBL;Acc:F1NA42]
Coordinates
chrZ:53319689-53320815:-
Coord C1 exon
chrZ:53320706-53320815
Coord A exon
chrZ:53319777-53320705
Coord C2 exon
chrZ:53319689-53319776
Length
929 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TTTTTCCTTTATGCTACCAGATC
3' ss Score
7.93
Exon sequences
Seq C1 exon
ACTGGCAAACTGAAACGCTACTACACAGACCTTGAAGCCTTTGCAATGGTAACTGCTGCTCTGTGCCATGATATAGACCACAGAGGAACCAACAACCTCTACCAGATGAA
Seq A exon
GTAAGTGCTTTCTTGCCACTTCCAACCATTTGCTGCTTCTCTTGCATGGAGTTGGTTCAGGCTGTGATCACACCAAACTCCAGCACAGCTCTGGTATATACAGGGTAACAGCTTCCTTGGCAATTAACTTCTCTATTCTGCCTGCTGTGAACTTGGGCTTATGCCTTGGCCAGTGAGAAAGCTGGAACTCTGTAGTGCTGGTGGCAGCTTGCTCTGCCTCCTAGCCTGCTGCCCTCAGTTAAACCAAAGCTCTACACTGTTGGAACAGGGTGGGCCAGGTGCAGTGCAGGCATGTAGTAGTCTGAGCATCACAGGAGATGCAGGATATTTCTGTGAGCATCCTGCACATAGGAAGCATGCTTTCTTCTGGAAAGCACTATACGTAGCACTGCCCTTGCTGACTGCAGAAACCTATCACCTACGTGAGGATGTGAGTGCTGCTTTCAGTAGCTGGTTCAAAAAACCAGCAAGGTAGTGTCAGATCATAACTCTTCTGCAATGCTTTTTGGCTGTGCTGTCCCACTGCTTTCTGGAGCTTTGGAAAAATGTAAGTGAAGCTGCAAGTTCATCACAAGTGCTTTGGGTATGAGATGGTCTTGCACTTTGCCTAGGAAGATGTTCAAGGACCAGTGGTTTTCCTGTTCCCATTACCAGGTGTCAAAACGTACTTTTTCGGGAACTTAAAAACAAGTTCACTATGCCCAATAACAACAATTCTGCCATGAATAACAACTTAGGTGAAATCCACAGGCAGAAGAATATTATATGCAGTGTACAAATAACTATAAGCAGAGTCACCACCTGTTGACAATATTACTCCTAAGCTTTTCCTAAATGAGTTGAAAGTACATGACAAATATCAAATAGGACACTTTTTTTTTTTTAAGTGCTATACTGACATCTTTTTTATTTTTCCTTTATGCTACCAG
Seq C2 exon
ATCTCAAAATCCTTTAGCTAAACTTCATGGATCCTCAATTTTAGAGAGGCATCACCTGGATTTTGGAAAGTTTTTGCTCTCTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373:ENSGALT00000032798:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(14.5=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGCAAACTGAAACGCTACT
R:
CTCTTCAGAGAGCAAAAACTTTCCA
Band lengths:
198-1127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]