DreINT0111802 @ danRer10
Intron Retention
Gene
ENSDARG00000000380 | pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:ZFIN;Acc:ZDB-GENE-030616-42]
Coordinates
chr14:24719623-24721925:-
Coord C1 exon
chr14:24721816-24721925
Coord A exon
chr14:24719711-24721815
Coord C2 exon
chr14:24719623-24719710
Length
2105 bp
Sequences
Splice sites
5' ss Seq
GAAGTATGC
5' ss Score
4.65
3' ss Seq
TTCTCTGATTATTTTGACAGATC
3' ss Score
7.79
Exon sequences
Seq C1 exon
ACAGGTGACCTGAAGCGTTACTATACGGACCTGGAGGCGATGGCGATGGTGACCGCTGGACTCTGTCATGATATTGACCACCGTGGCACTAACAACCTCTACCAGATGAA
Seq A exon
GTATGCACTCATTACTGTCAATGTCCTACTGTTCTTAGTATTGAAAAATGTATATGTGTAACATAGTTCAGAAATACTGGGTGAAGGCATTCGCACTTTTAAATCACCACCAGGGGTGTCACACACATATTTTTGGAGGCTGCCTCACATCTGTAAAGTAAAAAAGCCTTTCTAACAACTGGTAAATGAATCATTCATACATTTCAATGTAAACTATTTATTTATTAATTTATATAGATGTACAGCAAGTTTTGTGAGGGCATTTTAGTTTACCGTGCAGACAGACAGGAGTTTCAATCTTAGCTGAATTGTAAATTATATAATGGATTATATTTATATTTGCTTAAGGATAACAATAATTGAAATGATAATTTGCTTAATGTTTTTGTACCTTGGTGGTTTCTCTTGTGGATCAAATAAATATGAACACTACTACCAGCAGTAGGGGGTGACAAGTCGCTGGCTCACTAAATCAGGGCCCTATCATACACTCAGCGCAATAAGACGCAAAACATGTTCGGCGCAATTCGTTGCTATTTTCAAACCAGCGCAACAATAATTTTCATGTTTTGCACCTACATAAATATAAAAACCACTGCTTCAATGCCTTCTTCGTCTTTGAGGGCTTTTTTCAGTTTATTCATGACAATTTGCATTTGTATAATGTTATTATTATAAGTAGTAGTAATAGTAGTATTTATTATATGCATATTTATATTTGCTCAGGTTTTTGAGCACACTTAATTATTGTTGTTCATTTATTAGTTTGCTGAAAATTCGAACAAAATTTTGAAATATTTTTCAAACAAATCTTTGTACTCAACAAAAAAAAAAAATATGTAGGCTGATGGATGTCTTCAGTGGAGTGCGTATAACACTATTTTCTTATCCATGAAGGTAAAGGAGTAAAGTAAAGAGTAAGTGAAGAGAAAGAAAAAGTAAAGAGGCCGAATGGAGGAGGCTTATTCTTTATCCTCGTACTGCAGATGGTCTATTTAACTGTTTTCTCACTAGCGAAGCATTCAGTTTTTCCATTTACAAAGTCCAGCATGTAAATTGCAAATGCACTATGGTGCGACACAACTGACTTTTAAAAGGAATGGAAGGTGAGACTCTGAATGGTTTAATGCATGTTATGCACAAAACACACCCAGAACTCATTAAGAAAATAAGCACAACCCTGTTAGACCATGCCTCCTAAAAATAGCAAAAGTAGATTCAGGCATGCCCTTAATACTTTTGAACCACACGCTTTACACTTTGCACCTAGATCTTTAAAATAGAGCCCTTTATGATTCAAACATATGCCGGCATAGTTGATGGTTCATTCCACTGTGGCAACCTCTGATAAATCAGGGACTAAGCTGAAAGAAAATAAATGAATGAATGAAACACAAATGGCTCTTTGTAAATGGATCATTCACTCATTTATATCATTCAAAACACAATTGGCTCTTTGACAATAGATAATTGGATCATTGATTCAAAAAAGAAAAAAGATTAATTCTGGAATGAAACATTGTGGTGTTGCTGTGAGATGCACAATTTTTTTACAAACAGTACAATGTTCTGATCTGCCAACAAAAAATTTTCTAAACAAAGCCAGAGCAGAAAATTGCACAATATTGTGTGTAAAGTGATAATCACATAATATTAAGTTGACAATTAGTTTGATTTCTTTTTAAAATCAGTATTACATTTCTATCATGCACACTTACTTGCATTCAGGAAAATTGCATTCTTGCTTGTGAGATGATGTCACTTTCAAATGCTTTTTCACCTAATAATGCCAGCTTGCACATTGATGAAAAGTTTGTCCACCTCAACCAAATATGCATTTGTTTTATTAACCTATCAAAATTATTGTATGGTCATCTTTGTAAAAGTGACATGTATAGAATGAAATGAGAGTTGGTAGAGGATGGCTGTAAAAATACACTTTTCAAACTCAGCACTTACATTTGAGTAATTTTTCATGTTAAATGACCATGTTAAATTCATGCAAAATAATGTATTAGATTGCAGTTTGCTTATTTGAATATATATTTTATGGGAAGTGTGACCTTCTGGGTTTTGAGAATTGCTTTCTCTGATTATTTTGACAG
Seq C2 exon
ATCTGGGAATCCACTAGCAAAGCTGCATGGTTCCTCCATTCTCGAGAGGCACCATCTGGAATTTGGAAAAACTCTGCTTAGAGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000380:ENSDART00000000392:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(14.5=100),PF0771711=OB_NTP_bind=FE(32.7=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(11.6=100),PF0771711=OB_NTP_bind=FE(26.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]