HsaINT1026478 @ hg38
Intron Retention
Gene
ENSG00000132915 | PDE6A
Description
phosphodiesterase 6A [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr5:149884780-149886374:-
Coord C1 exon
chr5:149886265-149886374
Coord A exon
chr5:149884868-149886264
Coord C2 exon
chr5:149884780-149884867
Length
1397 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TCTCTCTCTTTCTCATTCAGATC
3' ss Score
12.45
Exon sequences
Seq C1 exon
ACGGGAAAGCTGAAGCGCTACTTCACGGACCTAGAGGCCTTGGCCATGGTCACTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACCTCTACCAGATGAA
Seq A exon
GTGAGTCAGCCTCCCTCCCCACACCCAACCCTCCGGATTCATTATCCAGCTCTGTGTGGCTCCCAGGCAGACTCACTGGCCAACAGGGAAGTCTTGTGGTCCACAGCTTCCCACCGCCTTCTGCCCTTGGGATCCGGGTCTCCTCCTGTAGCAGGCAGAATAATGACCACCACAAAGATGTCCAGATCTCAAATCCCTGAGCTGGGGAATATGTTGCCTTACATACAAAAGGGACTGTGCAGATGTGATTAAGTCGAGGATCTTGAGATACAGGGATTATTCATTCGAGTGGGCCCCATGTAGTCCCAATGGTCCTTATAAGAGGGAAGCAAGAGGTCAGAGAGGAAAGAAGATGCTACCCTGCTGGCTTTGAAGATGGAGGCATGGCCTACAAGCAAGGAATGCAGGTGGCCTCTAGAAGCTCAAAAGAGCAAGGAAACGGATTCTCCTCTGGAGCTTCCAGAAGGAAAGCAGCCCTAAGGACCCATTTCAGACTCCATACAGAGCTGTAAAATAATAAATTTTATTGCTTTAAGCCATTAAGTTTGTGGCAGTTTGTTATAGCAGCCATAGAAAATGAATGCATTAAACTCCTGTACTTGTCTCCTTCCTTGTCCTACCTGCTGCACTAATTTGAGCCAAGATGTTAATAACCAGTAATGGTTCATTCACTCATCTCGTATTTACAGTGCTTCTAATATAGTGTGGTAGGCTCTATGCCAGGCAAAAAAGGTGCTCTGATGAGCAAAACAGCTCCTGTCCTTACAGAGCTTATATTTCAGACAGCCCATAAAGCATAGTCCTTGAACCATGATCTCATTGGATCCTCACAACCACCCAGTGGGCTGGGCAGAGCAGGGGCTAATGTTATCCCTACTTACAGATGAGAAAACTGAGTCTCCGCTCAGGGCCGATGGCCTGTAAGTCATTAACAAGCTCTGAATTCATGCTGCTGAGTCTTCTCAATACTTTCATGCTGCTCTGGGGCTAGAGATTGGGTTTACATTTTACATTTTGAGAATCTAAATACTTAGCACAGTGTGTGGCACATAGCAAGTGCTCAACAAATAATTATTGAATGCAGAAATGAATAAATACACGGCTTGCGGAAATTCAGTTGTTTCCTTCAAGACTTGGATGTGAAGAATCAGGGCTAGATGATCTTGAAGCATGGCCCAGTGCTAATGTCCCTAAAATCCCTTATGGCATTGTGTGTGTTTGTGGCTTTCTCTGGGGAAGGGGTCCATGCTATTTAGTAGATTCTCTAATGAGTTCACGACCCAAAAGTAACTCGGAATCACTTGTGGAGAAGGCTGAAGACTGAGTCAGGAGACTTGATGTTTAGTCCTAATTTTCTATTGTCCACTCCATATTGATTCTCTCTCTTTCTCATTCAG
Seq C2 exon
ATCCCAGAACCCACTGGCCAAGCTCCATGGGTCCTCTATCTTGGAAAGACACCACTTGGAGTTTGGCAAAACACTGCTCAGAGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132915:ENST00000255266:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(14.5=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGCTACTTCACGGACCTA
R:
TCTCTGAGCAGTGTTTTGCCA
Band lengths:
182-1579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains