DreINT0112049 @ danRer10
Intron Retention
Gene
ENSDARG00000014527 | pdk3a
Description
pyruvate dehydrogenase kinase, isozyme 3a [Source:ZFIN;Acc:ZDB-GENE-061220-3]
Coordinates
chr24:24803713-24805133:-
Coord C1 exon
chr24:24805044-24805133
Coord A exon
chr24:24803791-24805043
Coord C2 exon
chr24:24803713-24803790
Length
1253 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
CAGCGTCATGTTGTTTTCAGATG
3' ss Score
8.31
Exon sequences
Seq C1 exon
CTCTCCTCTTTGGCAATGACATCAACCCAGCGCATCCCAAACACATCGGCAGTATTGATCCCAGCTGCAATGTTGCTGAAGTGGTGACTG
Seq A exon
GTAAGGTCACTGTTATTGTTTAGCAACAGAACATCACTAGCTGGGTTTCCATCACCCTGTTTTAATGCATATTTTGAAGTATCGCAAGGAAAATAATAAATGTTTTTTTATGCTCGCTTGAGGTGGTTTTGGGCTTGTTTACTGTTGGTTTCTAGGTTACCAATACTACACTGAGCCCCTTTAACAACTTGATGGAAACGCACCTCATTTGCTTTTGGGATTTTTTTTTGTGTGTTTTTTGCAAACTTTGAAAAGATTTACTTTGCTTTAGAATGAAAATCCAGAAACTTTTATATTTCAAACAAATTACTGTTAAATGTTACATTTATAAATGTTGGCAATAACTTAAAGAAAATTTACAAAAGTACCAAAATAAAATAAATCAAAATTTAAAAAATGATTATAATTACAAAAAACACAATAAATGCACTATAAAAATGAATTGTTAAAATTATGGTTAAATAAAATCTAAATATTAGAAATGGTTATTTTGTTAACCGAAACTAAAACCATAAACATTATTATTATTTATTTCAATAATTATTTTTCATGGTTTTAGTTTTAAGTTGAAAAAAAAAAATGAAATAATTTTTAAAACATTTCTTTAAAATGCTGCCACTAACTTAGGGGAAAAATGTACTAAAAGTAATAAATTAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATGTATAAAAAATAATGAAGGTTGCAAAAGCCACAATAAAACTAATATAAAAATTAATTATTTAAATTTTGGGGAAATAACATCTAAATATTAGACAGCGTTATGTTTTTGGACAGAAACTAAAACCATACAATTATTTTGTTATTAGTATTATTATTTATATTTTAATATTTTATTTCAAGATTTTTTTTATGATTTTAGTTTTTACTTGAAATAAAACTAATATTAATATAAAATAAAAAAGAATAAAAAGGAAATTGGTGAAATCAAATGAAATAATATGAGTAAGAATCTGCTTTTTCATCTCAGATATATATTCCATTTGAAAAATCTATTCAATTAGAAAACATTTACTTAAAACTGTAAGTTTTGCTGTATTTTTTATAAAGCAAAGTAAACTAGGTGTTTTTCATTAAAGCAGGTATTTAGTGAATAAAAGAAAAAAGTTTACCTAACCCCAAGCATTTGAGCCGTTGTGTAGGAAAATCTCCCCTATCCTTTGTTTAGATTTTGCGCTCCACTGATTCAGCGTCATGTTGTTTTCAG
Seq C2 exon
ATGCCTACGAAACCGCTAAGATGGTGTGTGAGCAATATTACCAAGCTGCCCCTGAGCTGAAGATAGAAGAATTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014527:ENSDART00000146930:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=PD(14.0=64.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]