DreINT0112343 @ danRer10
Intron Retention
Gene
ENSDARG00000060753 | pear1
Description
platelet endothelial aggregation receptor 1 [Source:ZFIN;Acc:ZDB-GENE-091230-1]
Coordinates
chr16:30540291-30543272:+
Coord C1 exon
chr16:30540291-30540411
Coord A exon
chr16:30540412-30543108
Coord C2 exon
chr16:30543109-30543272
Length
2697 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTCATTTGTGTTTGTTTAGGAT
3' ss Score
10.05
Exon sequences
Seq C1 exon
GGGCTGCACTGTGAGAAGCTCTGTGAGGATGGTTTCTACGGAAAGGGCTGCTTGTCTGCTTGTAAATGTGTTAACTCTATAGTCTGTTCTCCTGTGGATGGAGCGTGTATCTGTAAGGAAG
Seq A exon
GTGAGTTTTGGTACACTTATTAGCTAAAATAATGTACAAACTACTTGTTCAGTGAATTAAACATTCAGTCAGTCAAGTTATGTTATCAGAGGCATTCACACGGCAGGAAATGAGGCCCAAATACTACATTTAAAAACTGTAATTAAAAAAATCTAGACAAAACGATTTATTTGACAAGACTTGATCAGTACTTCCACATATCAGACTATATTTTCAAGGGCGCAGGCATCAATTGGCTATTGTAGCCTTATGGCATGATTCTCTGTTTTTCCTTTTGTTTGAATCAACTGGAAATACAACAACATCTTCAGATTGAGACGCAGGGTTGTGATAATATACACGCCTTCTAAAGCAAGGCATGCACATAAAGAATTATTTTGGGAATTTCTTGAATCGATATTGTTTTTTTAAACTGAAGTTTAATTCAAATTGAGGAGTCGTTTTTCCCTAATTTCACGACACATCGCCTAATAAATAATCATATAAATGATGATTTCAATGGCTTCTGTGTTTTACCTGTATGAAAACATGCTGCCTGACCATATGGTCAACATTTGGGATGAAAAAATATGGGATACGTAAAAATAAATATTGATTAAAGTTATAGTCATTTATTGAAGAGCAGCGGATCTCTCATTTTGATGTTTTGTTTGATAACAGTGGTGTCCCTTTAAGGATCCACAGATCTATAATGAAAGCATTCCATTACTTTTGTAACTGCTCATGATCATTTAGGTCAAAATTATTTGTGTTTAAAATAAAACATGCCAGGAAGGACATGTTTAGATATTATTAAGTGTATTTGGCTGTTTAAAAACCCACCCAAATCCAAAAGTGTCCACTTCAAATGGCATGTACAGAAGTTGATCTGGGAACAGTGTCTTTATACAGTGCATACTTCAGTCAGCTTTGCAACATGAATTGACTGATTCAGAGGTTGCATAGTGGAATAGGGGAAAGGAAGTGAATGCTGCCATTTTAAAATTCATTTTAACATCCTTTCAAGCCAATTTAAAGGGAAACCACAATTCTCTTGAAAAGTTCTTGCAGTTATATCACATTTGAGATCGGCACTTTGATGCTACTTTCACTTTTCATAGAAATATTACAAATATGGGAGAAATATAGGAAAATACATAAATGGGATCATAGCAGGATAGGATGGTAAAATATTGGAGATAATCTTGTCAAAAATGGGAGGGTTGACAAGTATGTGCCTGACTAATGACTTTAGGTATATTTATATAACTCAATCCAAAATTGCTGCTACATTTCAAGTATTTTCCATAAATTTTCCTTAAACTGGAATGATATACAAGACATCTATCATTTATAATGTTTAAATATGATAGGGAACATTTAATATTAATGTAAAATAATGCAAAATACTTAAATGTGATATGTAACATTTGATTCTGTCAGTAGTAATTGCTGTTTAACCCATTGTTCAAATTTTGAAACCAAGACAGACAGAATTTACATTTTCCGCCATTTTGTGCTTTAGCTTAAGATGCTAACCTTAAACCTGATACCACATGACATGTTTAAAACAGAATTTTATCAATTTTCAACATACTATTGTTTTTAAAATGTGAAAATGACATAATAATTGAGTTATGTAATTAAACTTGTATTGGTGTGTTTTCAACTTTATTTTTATTTTTTTTACAAATTAACAAGAGAATAATAATGACATGCCTCAATGCCTTCTAGAGTTTTCTGCCAAGAAATGACATCACCTGGAGCAAGTCATTCTATCAGTACTTTAAAGATTGTTATGCCTTTTTATAACTGATGTAACAGAGTTGACCATAATCTAGAAACAGACACAAAATGTCATTTTTATTAATAAAATTACAAATAATACGTAAAATAGATGCCTTATCAAAATGTTTATTTTTTAACTTCGTAAATACAGAAAAACTATGAAAATTAGACTGAGTTATTTAATAATATTTAAAGCTGAATGTATGATTCAGGCGGTCGAGAAAGTAACTAATAGGTAAAGTGGGAGTCTTTAAGTTAATATTTTCGATTCAAAATGTCCCTAAATATACATACAAACATTATTTTTAGAGATAAATGAATATATTTTTTGTTATTTGAAAAGTTTTTGTTTTTGAAAAAAAAAAATACAATGTTTATTTAGGAAATGCAAAATGTAGCTGCAATTCTAGAATAACTCAACTTTATAAATTACAATATTACTACTATATTATATATTATGCTACTACTATAATGCATACTTACAGGGCCGTTTATATCGAAGTCGATTTTTAGCCGCACCATGTTGGTGTTTTGTAACCTCTAGTTTTTTTACGAGGAGGGTCGTTAGCCCAACGCTCAACCCCCAACCCCCAACCTGGAAAACCAGGACATACACACATGCACAACGGGCATTTTAGCTTATACCTAATTCACCTATAGAGAATGTCTTTGAACTTTTGGGGCCAACCGGAGCACCCGGAGGCAACCCACGTGACTCAGCCGGGGCTTGAACCAGCTACCTTCTTGCTGTGAAGTGACATCGCTACCCACTTCGCCACTGTGCCGCCTCACTACTATAATACTATTATTATATAACATAACTTTTCAAATAGGTTTCCTTTCGGCTTCATTTCCTATGTTATGTTGAAAGTTTGCTGGGGTAGTGGGAACAGTGTCACCCCAACCCTGTTTTCATTTGTGTTTGTTTAG
Seq C2 exon
GATGGAGAGGACCTGACTGTTCAATCGCATGTTCAGAGGGCACATGGGGTCCTGGCTGTAACCGAACTTGCAAGTGTACAAATGGAGCGTCTTGCGACCCTGCTGATGGGTCGTGCAAGTGCACCGCAGGGTGGAGAGGAGCATCCTGTGACGAGCCCTGTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060753:ENSDART00000137977:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(47.8=53.7),PF126612=hEGF=PU(46.2=14.6)
A:
NA
C2:
PF126612=hEGF=PD(46.2=10.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]