MmuINT0117727 @ mm9
Intron Retention
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87558420-87559947:-
Coord C1 exon
chr3:87559827-87559947
Coord A exon
chr3:87558584-87559826
Coord C2 exon
chr3:87558420-87558583
Length
1243 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TACCTGCTTACCCTCCTCAGGTT
3' ss Score
8.22
Exon sequences
Seq C1 exon
GGACCTCACTGCGCTAACCTATGTCCACCGGACACTTACGGGATCAACTGTTCCTCCCGCTGCTCCTGTGAAAATGCCATTGCCTGCTCTCCCATCGACGGCACGTGCATCTGCAAGGAAG
Seq A exon
GTAAAGGATTAGGGAGGAGCAGACCCGGTGCAGTCGAGGGCAGGGGTGGGGGAGGGTTGGGTGCGAGGAGAGCACCCCCAGGGCTGAGCTTATTAGAGGGCCCTGTGGGAATGGATCCAGGCTAGTTTCTGCTAGAGTACTCTTTTCTTGTCCTCTTTCATTGGTCCCTGTCCTGGCTTCTCCAACCCCACTTCTCCCTGGTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTGTATTGAGACAGAATGCTGCTATATAGCTCAGGATAGACTCAAAGTCTGAGAACCTACTATGTTTCTGAGCTTCCATAACCTCTGGGGTGCTGGGATCATACAGAATACCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCCAGAATTATTTTATGTATACAAGAACACTGCAGCCATCTTTAGACACACCAAAAGAAGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGTACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCGTAACCCTTGAGTCATTGCTCCAGCCCCCAGAACATCTTCCTTTAACTACAAATGTCATACTTGTCCCTAAATAGTGCAGACTAGAAGTCTCTGTGGTGATCATCTCTCACCCTCAGTTCTGTGGAAACATACCATGCCAGTGCCAGGGAGGTCTATCCCTGTGACATGTTGGCAGCCCTTAAGCTGACTTCCGATCCAGTGATATCAGACTCAACCAAGCCTCAAGTTTTCAGCCCCTGTTTCTTCCCATTATCCCACAGATGATCTGGTGGGGCCACCACTATGGGCTTGACTTTGTTGCCAGACTCCTCCATTTTGTAGGAGAGACAGAGGAGGCCCAGGTGGGATGGAGGGAACAGAGGCAGCTCAGGTAGGGTAGAAGAGACAGGAGGGTCAAATGGGTTAGAAGACACTGGAGAGTCAGGTGGGGTCAAAGAGATTATGGAAGCTCAGATAGGGAAGAAGAGACTGGAGGTACAGGTGAAGTGGAAGAAACAGAAGGCCCAGGTAGGATGGAGGACACAGGATACTCAGGTGGGCTGGCAGAGGCGGCCAGGTGGGGTAGAAGCCATAGGAGGCTGAGGCGATTGAACATCGATCGCATCAGTGAGAATCTTTGAATTCAGCTGCTGAGTGTGTTTAGCATCAAGAGTTTGTGAGCTTTGCTCATGCCCAGCTCACAGAGTGTACCTGCTTACCCTCCTCAG
Seq C2 exon
GTTGGCAGCGTGGTAACTGCTCTGTTCCCTGTCCCCTTGGCACCTGGGGCTTCAATTGCAATGCCAGTTGCCAGTGTGCCCACGACGGAGTCTGCAGCCCCCAAACTGGAGCCTGTACTTGCACCCCTGGGTGGCATGGTGCTCACTGCCAGCTTCCCTGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073-Pear1:NM_152799:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(23.1=7.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTCACTGCGCTAACCTA
R:
CAGGGAAGCTGGCAGTGAG
Band lengths:
281-1524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: