GgaINT1021175 @ galGal4
Intron Retention
Gene
ENSGALG00000028622 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr25:407335-407704:-
Coord C1 exon
chr25:407584-407704
Coord A exon
chr25:407499-407583
Coord C2 exon
chr25:407335-407498
Length
85 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
ACCATCCTCTCGCTCCGCAGGCT
3' ss Score
11.91
Exon sequences
Seq C1 exon
GATGAGCACTGCTCCTCCCTGTGCCCCTCGGACACCTTTGGGGTGAACTGCTCAGAGCACTGCTCCTGCCAGCACGGCGTTGCCTGCTCCCCCATCGACGGCTCCTGCATCTGCAAGGAAG
Seq A exon
GTGGGCATGCAACAAGGGGGTTGGGGACAGCGGGGGTGACGCGTGGCCGTCCCCGTGCCCACCCCACCATCCTCTCGCTCCGCAG
Seq C2 exon
GCTGGCACGGACCTGACTGCTCCACACCGTGTCCTGATGGTACCTGGGGCCCTGGCTGCAATCAGAGCTGCGACTGCGCCCACGGGGCCACCTGCAGTGCCCAGAGTGGGGTCTGCAGCTGCACCCCGGGATGGCACGGCCCCCGCTGCCACCAATCCTGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028622:ENSGALT00000045144:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(11.1=7.3),PF126612=hEGF=PU(46.2=14.6)
A:
NA
C2:
PF126612=hEGF=PD(46.2=10.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCCTCGGACACCTTT
R:
CAGTCGCAGCTCTGATTGCAG
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]