DreINT0113292 @ danRer10
Intron Retention
Gene
ENSDARG00000078050 | phf19
Description
PHD finger protein 19 [Source:ZFIN;Acc:ZDB-GENE-081105-128]
Coordinates
chr8:12347340-12350303:-
Coord C1 exon
chr8:12350158-12350303
Coord A exon
chr8:12347436-12350157
Coord C2 exon
chr8:12347340-12347435
Length
2722 bp
Sequences
Splice sites
5' ss Seq
TGGGCAGTG
5' ss Score
-8.17
3' ss Seq
TTCTGTGATTTGCCCATCAGGTG
3' ss Score
8.06
Exon sequences
Seq C1 exon
AAAGGGGGAGCTTTGAAGAAAGGGCAGCTGGCCAAAGATCTGCAGGCCATGAAGCAGGTGCTGACCTATAATCCAGAGGAGCTCGAGTGGGACTCTTTGCACCGCACAAACCATCAGCAGTGCTATTGCTATTGCGGAGGACCTGG
Seq A exon
GCAGTGAGTCTTCATCTCTTTATTTTTGCTGTCTTTCTTACTTGATTTCTAGAGGTCAAACTGTTATGGAAAGAATCGAATGGGTGTCTGAAAGTCTAACATACACTGTGAAAAATGATAGTATCCGCACAATTTTATGATGTTATCCCAACACAAAATAATTAAGTTAACAAATTTAAGTAAAATAAATATAAAACAATTACATTTGCCAAGCAAATCTCAAAAATTGAGTTTTCAGCTCATTTTAAATAGTTTGAAGAAGCAGCAAAGTCATTTTTTTGCTTTTGAGTGTGGGTAATACATCTTAGTTTTACTTTATATTGAAAATAATTACTAAAAGGTAAGTAGTCTGTTGAAATGTGTGAGAAGTAAATGTTTTTATAATTTATAAACACACTAGGGCTGCACGATTCTGGCTAAAATGTGAATCACAATTTTTTTCTTAAAATCAATTATACAGTTAAACAAACTGTTTTTTTGTTTGTTCAAATGCAACTCATATAAACTGTAAAAAAATCAGTGCATAAGTTGTAGATAATTAAGTGCATCAAAGTGACTGCATGAAATAAGTCAAGCGAATATCCTGCGCAAATTGACTCCTGTTTGACTGGACTTTTAACTAATACATTATTAAAGACAACAATTGTCTTCGTTATTATAACTATATAAACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATATATATAAATATAAAAATTTATAAATTAATATATACTGTAATGTTTACTGCATGTTGTTGGGTAATGTTAGGTTATGCATTTACTAAAGTTAACCAATTAGACTTAAAGTAAAGTGTTATTGTCAAAATTATATAAAACAAATTTTAGTTGAAATTTAGTTGAAATATTGTGTCGCTTATATGGTAGCTAGATGTGTAAGTAGTATGCGACTACAGTGTATGTACATACTGGTACATAGTATTTACTTGTTTAATACTGGTGTAACTACACAAATGTAACAACACGCTGAATAGTATGTGTAAGTTCAAATGTGTAACAAGACATTAATAACACAATCTTTGGTAAACTACCCCTTTAATGTGTATTACTGATGTGATTCTACTTTTTACCCTTAAAAAATTAAGGCATTTGTGTATATCTATATACACATACTTTTTTTTGCTGGATTTTACTGTTGTTAAACTGTTGCACAAATGCTTAGGTTTTATATATTACACAGTAATTTGTGACCATTTTAAACTTTATATTGAGTAGACAGTTCGTATGGATTTACCCTAAAATCACACTAGCATCACAAGGTGAAACCTTCTAATGCAGCGTTAATTCTGCCATTCTTATTCTAATACAATGTTTAGAGGTACATGGTATGCAAACATGTGCGGAAGTGGGAAAACACCTGCAACTATATTGTTGTTACACAATGCACCTATGTAATTTTTGTTACAGATGTGTACTTATTTAGTGTTGTTGTTACCAATTTCCTGTTATACATTTGAACTTACGCATACTATTCAGTGTGTTGTTACATGTGTGTAGTTACACCAGTGTTACACAAGTAAATGCTATGTACCAGTATGTACATACACTGTAGTTACTGTACATACTACATACACATCTAGTTAACATGTAAGTTCACAGGTATAATCGACAGTTCATATAAAGTGGGACCATATGGTAAAACATTTAAACCCCTCACAGATGAATAATGATGATAACAAAATAAAAATAATGATAATAAAAATAATTAAAATAATTAAAATGAATGAATAAAATAAAGTTTGCCATCATTTTATTTTACAGAAGAAAGATTTGTACATCCAATTACACAAACAAGTTACATTTAAGATTAAATAACTTCAAAATATACCTTAATATCTCATAATGCTTTTCCACCTCTTCTGAAAAAACATCAGTCTTCATTTATAGACATGCAGTCATTTTTTTCCATCATATATATTTGTTTAAAACTGAAAAAATGTAAAAGACATAACTTGATTTTTTTTAAACTAATACTGAAACGAATCACTTTAATTTCAAAAATAAAAGTTTCTAGTAAATATAAAGACAGATTCCGTGCACAGTAAATCATAGTTTCAGTGCATTGGATAGTGCAGTGTTTGATAGCAGTGTTTGATAGCACTGGAATGTTTTATTAATGATAGTGAAGTGGTTTGTTTGCATGTTTCAGTGAAATGCAGGAAAAGCGTGACAAATGTGCTCACACATCTCTGCCTCGTGTGCTCGGCTTCTGTCTGCTCACTCAGCGCAATCATTTTGATCAAAACAAAATTGCTTTATGCAACATGCGGCAAAACAGGGACTGCCACAGGACTGCAGAAAAACAAAGTCCTTACTTTGCTTCCTAAAAGTAGTCAACTGATTATTGTGTCAAAGTCTGTGACACTGTTCAGCATTTCCTGTACTGTGTGCGCGCTGTGATACTGAATGAATGTCATCAGGTGAAATATAAATTAGCATTTTATATTTACCTTAAAATAACCATAACAAAAGCGGTGTTGTTATTGTTACCTACTACAAACTGAATGTATTGTTGCTGTTATACACACACTAGCTTTGCCTAACTTTATTTTTGTTTATGCTAGATGTAATTGGTCTGTTTAGGCCTTTGTGGTTTGTGTCTGATAAGAAACCTCACACAGTTCATTTCTTATTCTGTGATTTGCCCATCAG
Seq C2 exon
GTGGTATCTAAAAATGCTGCAATGCTTTCGCTGTGAGCAGTGGTTTCATGAAGCGTGTACGCAGTGCCTACAGGACTCCATGATGTTTGGAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078050:ENSDART00000142150:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PU(13.5=14.3)
A:
NA
C2:
PF0062824=PHD=FE(60.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]