GgaINT1021406 @ galGal4
Intron Retention
Gene
ENSGALG00000001595 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr17:8290999-8291462:-
Coord C1 exon
chr17:8291314-8291462
Coord A exon
chr17:8291095-8291313
Coord C2 exon
chr17:8290999-8291094
Length
219 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGC
5' ss Score
6.91
3' ss Seq
CGGCTCCTCTCCCTCCCCAGGTG
3' ss Score
12.54
Exon sequences
Seq C1 exon
AAAGGGGGTGCCCTGAAGAAGGGAGCCATTGCCAAGACACTGCAAGCCGTCAAGATGGTGCTGTCCTACAACCCCGACCTGCTGGAGTGGGACTCTCCGCACCGCACCAACCAACAGCAGTGCTACTGCTACTGCGGGGGCCCTGGCGA
Seq A exon
GTAAGCACTGCCTGCTGAGCGGCTGTCCTGCACCATTTCATGGGCGTTTTTCCTCCAAGAGAGAGCCTCTGCTTGCAGGGCCGTTCTCTGGGGCTGGCGGCTCTGCTGCCTGCTCTGCCCCGCACTGTCTGCATGCAGCTCCTTGCCAGCGAGGGTTCACGTTCCTGGCTGGGGCTGCTCACGCTGCCCTCCCTCGCACCGGCTCCTCTCCCTCCCCAG
Seq C2 exon
GTGGTACCTGAAGATGCTGCAGTGCTACCGCTGCCGGCAGTGGTTCCATGAGGCGTGCACTCAGTGCCTCAGTGACCCCATGATGTTCGGGGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001595:ENSGALT00000002421:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PU(15.1=16.0)
A:
NA
C2:
PF0062824=PHD=FE(60.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGGGGTGCCCTGAAGAAG
R:
GATCCCCGAACATCATGGGGT
Band lengths:
244-463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]