HsaINT0123953 @ hg38
Intron Retention
Gene
ENSG00000119403 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr9:120866870-120869330:-
Coord C1 exon
chr9:120869182-120869330
Coord A exon
chr9:120866966-120869181
Coord C2 exon
chr9:120866870-120866965
Length
2216 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
3' ss Seq
TGGCTCCTCTGTCTCTCCAGATG
3' ss Score
11.22
Exon sequences
Seq C1 exon
AAAGGCGGCGCGCTGAAGAAGGGCGCCATCGCCAGGACGCTGCAGGCCGTGAAGATGGTGCTGTCCTACCAGCCCGAGGAGCTCGAGTGGGACTCGCCCCATCGCACCAACCAGCAGCAATGCTACTGCTACTGCGGCGGGCCCGGAGA
Seq A exon
GTAAGGCAGGGGGTCAGGGCCCCCCGGGCGGCAGGGCAGGTCTCCAAGAATCGCCAGCAGGGACCGCCCATAGGGAGCGAGCCTGGCGTGTCAGCCAAGGCGGGGACCTTGAGGGCGGGCCCAGTGTGTTGCGCTGTGGGGGCGGGGCCTCGAGGGGCGGGCCTGGAGTGTCAGCCGCGGGGGTGGGGCCTCGGGGGCGGGACTCGGGGAGGGGGGGGTCAGCCGCTGCGGAGGTGGGGCCTCGAGGGGTGGGCCCGGAAGATTGGACCTGAGGGCGGGGCCTCGGGGGGCGGGCCCGGAAGGTTAGACCTTGGGGCGAGGCCTCGGGAGGCGGGCCTGGCGGGTTGCGACCGCCCAAGCAGGGCCCCAGGGAGGTGAGGCAGGTCGAGAAGCACCCTGTGGAGGGGCGGGGTGGGGAGGAGGGAATAGTAAGGCCTCGGGAACAGGACCTGAGGAGGCGAGGCCTCAAGGGGCGGTCCCTGAAGGGAAGGGCTCGGGGTGGGGCCCGAGGGGGCGGGACCTCAAGGGGAGAACAGAAGGCCGGCTCCGCGTGGCATCTAGCACTGTGGAGCAGGGCTGGAGGGCAGAGGTGTTACCTTGGAGCTTTGTAGGAAACGAGGAAGTATTGAAGAGTGGTTAAGAGCCTGGGCCGGACACAGTGCGAATCCTCCCAGGACGTCCACGTCCTAGCTCTGCTCCTTACCAGCTGTGCAACCCCTTAGCCTCAGCTCTCTGAATAGTTTCCCCATCATGTGGTGATTATGAGCAGAGCATGAATTACGTAATTCACATAGAGGTTCTCATAGTGCCTGGCATTTGGTAAACAAAAAAAATGTGAGCTGTTACTGGTGGTAGTGGTGGTACTAATGCATGAAAGTCAAGATAACCTTTTCACAGTCAGAGTCAGTGGAACCGGCTGCTGGTGAGATATGAAGATCCTTTTCCCGCCTGGCGCGGTGGCACACGCCTGTAGTCCCAGCTTCGTAGGAGGCTGAGGTGGGAGGATCACTTGAGCTTGGGAGATGGAGGCTGCAGTGAGCTGTGATCATGCCACTGTACTCCAGCCTGGGCGACAAAGCAGGACGACCCTGTCTCCAAAAATAGAAAAGATTCTTTTCCCTGGAGATGTGCAATCAGGCAGGGGTAGGGGGCCGGGGGGCGGGGCATGCTATGTCGGGGCCACTGTGGAGGGAATTCTTGTCCTGGCTCTGCGGCAAGAGTCTTTGATTCTTCCTTGCCGACCTGGGCCTCTATGTAGCCATGGCAGTTGAGCTTGCTTCTTTGGGCTGAGTGCACGTGGCATTGTGGAAGGAACCACAGATGTAAGAGGGAGGGTCTCTGCCCTCAGGAAGTTCAGCCGTCAGGACCCCCTGAAGTCCTGAATCTCAGCCCCAAGCTCCAGCTGGGTAACTTGGGCAAAGCTTGAACTACTTCATCTCTCAAATGGGCTTAACCTTAACTTCAGGCCCATGAGCTTCCCCAAGTATTGTCAGATGGAGAAATGCTTATGGAAACCTTTCCTGCATTAATGCAGTGTTTCTCAACGCCTATGGGCAGAGTTGCACAGGATGCTTGTTAAAAATGCATCCCAGAGGCTTCCCCAAAGATTGAATAGGTCTGCAGTGGACCAAGGAATCTGCGTTTTAACCTGGAGCTCACCTGACAAGGTGTCAATGAAGCATTGAGCATTTTGCTCTTCATATTCCATGAATAGTTGTTGGATGACCATGATAGGCCAGATACAGTTGCAGGTGAGAAAAGCCAGATGTAGTCTTGCCCCCGTGCAGCTTACAGAAACCATTATTCTCCCGTGAAGTCTCCAAGGCAAACGTTTCCCTGTCAGCAGTGTTTGGGAAGCAGCAAGTCCAGAAATGGTGGCTTCATTGTGGCATGGCAAGGAGAGCACAGCCTCTGAAGTTAGGGAAACCAGAATTTGAATCACCATCCTCCACTTGCCTGTGAGCTAGGGCAAGCCATTTCACCTGTGACTTATCTGTAATATGGGGACAGTGTCCCATCTTTTACCAGGTGGTGAGGTGAAATGAGAGTATATGTCCAACTCTCAGGTCCTCCCTTGGCACAGCCTAAGTGCTCAGTAACTGAATTCTCTTCCCTTTCTGCCAGTGGAGGGCAAATTTAACTTGGGAAAGGTTGCCGAAGCTCATACCTGACTGGGGGTGTGGTCCTGGCTGACCTTGGCTCCTCTGTCTCTCCAG
Seq C2 exon
ATGGTACCTGCGGATGCTGCAATGTTACCGGTGCAGGCAGTGGTTCCACGAGGCCTGCACCCAGTGCCTCAATGAGCCCATGATGTTTGGAGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119403:ENST00000373896:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PU(15.1=16.0)
A:
NA
C2:
PF0062824=PHD=PU(67.5=96.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development