DreINT0115007 @ danRer10
Intron Retention
Gene
ENSDARG00000079585 | pkn3
Description
protein kinase N3 [Source:ZFIN;Acc:ZDB-GENE-030131-1902]
Coordinates
chr5:31252489-31255007:-
Coord C1 exon
chr5:31254731-31255007
Coord A exon
chr5:31252644-31254730
Coord C2 exon
chr5:31252489-31252643
Length
2087 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
AAAACCTCTTGTTTTCTCAGATG
3' ss Score
8.56
Exon sequences
Seq C1 exon
AGCAGCGCTCTTCAAGGTCTGGCTGAAGGGGACCTGATGGACCCTGAGTTTCAGCAGCGTGTAGAGGATGCAATTGCTCTTCTCCGGCAGGAGATCCAACGCGAGCTGAAGATCAAAGAGGCGGCCGAGCGTCTACGCCGAGCAGTGACCAACCGCAAGAGTGCTGCTGATGTGGATGGTCAGCTTAGAGCCTCCAGCCGCAAGCTCGAGCAGCTCCACTGGGAGCTTCAGGAGCTCAATGCACGTGCTATGGCTACACAGAAGGAGAATGTGATGG
Seq A exon
GTAAGACAAGGAGTGATCATGCTTTGATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATATATATATATATTAGGGGTGTCACGATTTCGATTTTTAATCGAAATCAATCGAAATTTATGCTCAATTTCGATTATTGAATAAAAAAATAAAATCGTCGATGCTGCCACGCCCCCATGTCACGTCAGCTTGTCTTGCCAAGCGGGAAAAAACAGGCTTGTTGAAGTGCTTGTTAAACTGCAGAACCAGGAGACCTAAAAACACAGTTTTGCAAGCTCTGCTATGTACGTATTGGGGTTCATCCGATAGACAACACCGGCATAGCGATCCTCCGCCCGCCCTCGTTGCAAATCCGCTCGCGAAAAGTACACACAGTCAGGCCCTGTTTACACTGTCTTTGTTTTTAAATGGCATTTTAGAACGACAACGATTTGACATCCACAGTGGCGTGTAGCATTTCTGAGCAGCTCTTCTTCCTCTCTACCTCTGACACACACACACACACAAACACAGACGCACACACACAGCCATGGGCTCGAGACAGCGGGTTCAGGCAGTCAGAGGATCAGTAGACTGCTTCAATCTTTCACTCACTTGTACTTAGTCATTTTAGCGAACACCTCAGATACTGTTGGCTGAATCCTGTTGGCTGTGCGTCTTTTTTACCGACGCCATTATAACGACACAGATCACTGCCTATTCACGAGTCCCACAGAAAAAGTGATTGACAGGTGGTAATTATGTGTGTAACTTGCCTTTATTCATGTACTGTATGATTTGTTTATGGGTAAAACAAAGACCATGCAGGTCAGGTAGTTAAAACGGTAGGCTACAAATAATTAATTGGTCATTAATTAATTAATTATTCATAATCGAAAATCGAATCGTGCCTTTAGAATCGAAAATGTAATCGAATCGAGGATTTGGAAGATCGTGACACCCTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATTTATTTTTTTTTAGATAAAAGTTAGTTAAATTGTTAAGCTTTTTTCCTAATTATTTAACTTTGTTATTTACATTTGGCTAATTATCATAGTTTTTTTGGGCTTTTGTTATAGGGCTGCACAAATCTGTCAATAAAGCTGCTTCAGTAAACAGTAAACTGGGCAACAGTAAACCTCCAGCATGTGTATTCAGATGAGAGTCAGATCAATTCTATGTGTTTGTATTTATATGTTTATTAGATGCATTAAGTCAGTGAAATAAATCTGCTTATTCACCAAGTAAAAAAAAATGGTTTATTAAAATAATCCTGCAGGATGATACCTGTTACACACACAGAGTGCATGTGTAAGAGACTGTGTCTCAAGTCTTCTCAACAGACAGTTTTATACCCATCAGTGCACGTACACTCACATTTGTGCCAAACTCCTGGAAAGATGCTTTTCTGGTGGGAAAGAAAAGAAGTTTAGGAGTGCTACAATGTGTCATGCTTTGGCCTTGGCCTGTACCAAACTGATTCTCTCTGCATTCTACAAAACCTGTTGTTCATTAAAAATGTAATCTCTATACATAATATATATATATAGTAGGTAGTGCTGTCGCCTCACAGCAAGAAGGTCGCTGGTTCGAGCCTCGGTAGGTCAGTTAGCATTTCTGTGTGGAGTCTGAAGGTTGTCCCTGTGTTCATGTGGGTGTCCTTCGGGTGCTCCGGTTTCCCCCACAAGTCCAAAGACATGCACTATAGGTGAATTGGGTAAACTAAATTGTCTGTTGTGTATGTGTGTGAATGAGTGTTTGGGTGTTTCCCAGTACTGGTAAAATAAATTAATAATGATATTTTTATCAATGCTGAAAACCGGTGAATATTTTTGTGATGATAAATAATAAAACCTTAGAATTAACAGCATTTTTACTTGATTGAAATTCTTTGTTACATTTTAAAATATCTTGACTATATTATGTGTGCTTGCTGAAAATGTTTTTGACTCATGTCTTTTACAGTCTAAAATAAATCAGTTACTAAAACCTCTTGTTTTCTCAG
Seq C2 exon
ATGATGCCACCTCCCCAGACCCGTGCCATTGGGAAGAAGTCACATCACCCTTGGGCAGTCATGTCCGTACACTGAAAAAACAGCTTACCATGGAGCTCAAAGTGAAGCAAGGAGCTGAGAACATTATCCAGACTTACACAAACAGTTCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079585:ENSDART00000112546:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=NA C2=0.442
Domain overlap (PFAM):
C1:
PF154561=Uds1=WD(100=81.7),PF0218511=HR1=WD(100=73.1)
A:
NA
C2:
PF154561=Uds1=PU(48.8=75.0),PF0218511=HR1=PU(43.1=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]