RnoINT0112248 @ rn6
Intron Retention
Gene
ENSRNOG00000004131 | Pkn1
Description
protein kinase N1 [Source:RGD Symbol;Acc:69308]
Coordinates
chr19:24822428-24824883:-
Coord C1 exon
chr19:24824583-24824883
Coord A exon
chr19:24822580-24824582
Coord C2 exon
chr19:24822428-24822579
Length
2003 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
TTCTCTTCTTGTTTCCTCAGATG
3' ss Score
11.45
Exon sequences
Seq C1 exon
AGTGAACCTCGCAGCTGGTCACTGCTGGAGCAGCTGGGTCTGGCTGGGGCAGACCTGGCAGCCCCTGGGGTGCAGCAGCAGCTGGAGTTAGAGCGAGAGCGGCTGAAGCGGGAAATCCGAAAAGAGCTGAAGCTGAAGGAGGGCGCTGAGAACCTGAGGCGGGCCACCACTGACCTGGGCCGCAGCTTGGCCCCTGTGGAACTGCTGCTGAGGGGCTCCGCTAGACGGCTTGACTTGCTGCACCAGCAGCTGCAGGAGCTGCATGCACATGTGGTGCTGCCCGACCCTACAGCGGGGAGTG
Seq A exon
GTGAGCAGAAAGCCTGAGAGTGCATTCCACCAGGACACTGTCCTGAATCCATAGACGCCATGGGAGAGGCCAGACTCACAGGGCCACTATCACCCGGATAAACATAGTCACACCTGTTCCCAGACCCCACTCAAAACTGTCCTTGGCATTAGGAGTACCTAGATACACACACCAGCATCCAGATAATACCAGATACCTAAGGACACCATTACAGCTATTCCCAGGACATTTGAGTGACATGCTGCCACGTGAGAACCCCGAAGCTCACAGTCACACTAACAAACACCCAAATATTGCACATCCGTCACCCTCATGGCTCCCTAAATCATTCTAGTACAACAGAAGTTGTGGACTATTTTTCTGTTGTTTTTGCTTTGTTTTATATTTTTTGTGTTTTATATATTTATGCTCTTCTCGGTTTTTTTTTCTTTTTATTGTTTTTTTGAGACAAAATTTTTCTAGGCTGCTAGGGAAGGGCTTTTGTTCCTGAGTGGCAGAGATTACAGACCTGGACCTGGTTTTTAATTTGATGGTGGTGGCACATGCCTTTAATCCGGGCACTCCAGAGGCAGAGGCAGGCAGGTTTCTGAGTTCAAGGCCAGCCACTATGGAGTGAATTCTAGGACAGCCAGGACTACACAGAGAAACCCTGTTTTTAAAAACACAAAATTTTGTTTTTGATTGTGGTTAAAGTAAAACCCCACAGGTTGAGGAGTTCTGCTAGTAGATACTTTAGTATTAAGTATTAAGGCTCAAATTTGGATTCCAAGCACCCAAGTAAAAAGTCTTGTACACGTGTTGGTAATCCTTGCATTTGGGAGGTAGAGACACGGCGATCTCTGGGCTCACTGCTCAGTTACACAAGTCAATCAGAGAGCTCCAAGCTCAGCAAGAGACCTTATCCAAAAAGGAAGGAAAGAAGAAAGGAAGGAGGGAGGAAGGAAAGAAGGGATGGAGGAAAGAATGAAAGAGAGAAGGAAAGAAGGAAGGAGGGAGGAAGAAGAAAGGAAGGAAAGAAGAAAAGGAAGGAAGGAAAGAGGGAAGGAGGGTAGAGAACAGCTGAGGAACTCACCTGCTGTTCTTTTAGCTTCCATGTGCACACATGCATGCACACATGTGTATACATCCACAAAAAGAAAACACAGCACGATTTATCATTGCCACAGTTCAGTAGTTTTATGCAGTAGCAAAGCAAGGCCACAGGGCCTTCATCTTGTAGCTAAGATGTTCATGGTCACAGGAGCAGGAGAAGATACCCAGAGTCTGTCACACATATGCCACCCGGCAACACAGCACACATGATCCCATGTTTCGAGAGAGAGTAGCACAGTCCCAACAGCATCCAAGGTTTGCATCCTGTCACTTATACCTAGAGACACACTAACCCACAATGACATTAGAGCTCTCCCATTGGGTCATACCACCCTCAGAGGTGTCCCACCATTGTCCCATCCACAGCTGACTTCACATACAGCCAACAGGCTCAGCCCCTCTGCGTTTTGCTGTGTCCCCTATTGGGGTCCAAGGTGGAGTTCAGTCAAGAGTCTGAGCTCCCTTCTGCAGTGAGTTCCCCACCACTGCATCTCTCCTGAGGTACAGACCTCACCTCTGACAACAGCCAAGTCTCAAAACAGAATCCCAGAAGCCCCTAGAGATCAGAACTGAGCTATACCAACAAGAAGCCATGTAAGTGCCATACACCCACATCTAGGGTACTCCCACCTGTGGCCTACAGACATAATCACACTCACACCGTGGGCCTATACACCCTGAGGTAGATGGGGGCATTTATTCCAGCTAACCCTGAAGACCTGCATACCTGGTCACTAACTCACTCTCCTTCGTGCAAAGCCCATTTTGTCACTGAGAGCCATGTGTCTCCTGCCTGTGTACTTGCCCCCAGGCTCCTTTTCTGGACGAAGGCTTCCTATTGGCTGGGACAAAATCTCCTGGGTCTCCTGGAGTGACCACTGTATGAGCCTTTTCTCTTCTTGTTTCCTCAG
Seq C2 exon
ATGCTCCCCAATCCCTTGCAGAGGGCAGCCCTGTCTGCTCATCCACCAACCTGAGCCGAGTGGCTGGCCTGGAGAAGCAGCTGGCCATTGAGCTCAAGGTCAAACAGGGGGCAGAAAACATGATCCAGACCTACAGCAATGGCAGCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004131:ENSRNOT00000005770:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.228 A=NA C2=0.392
Domain overlap (PFAM):
C1:
PF0218511=HR1=WD(100=68.3)
A:
NA
C2:
PF154561=Uds1=PU(47.4=70.6),PF0218511=HR1=PU(43.8=62.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]