HsaINT0126126 @ hg19
Intron Retention
Gene
ENSG00000123143 | PKN1
Description
protein kinase N1 [Source:HGNC Symbol;Acc:9405]
Coordinates
chr19:14551955-14554433:+
Coord C1 exon
chr19:14551955-14552255
Coord A exon
chr19:14552256-14554281
Coord C2 exon
chr19:14554282-14554433
Length
2026 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
CTCCCACCTGTCGCCTCCAGATG
3' ss Score
10.14
Exon sequences
Seq C1 exon
AGTGAGCCTCGCAGCTGGTCCCTGCTAGAGCAGCTGGGCCTGGCCGGGGCAGACCTGGCGGCCCCCGGGGTACAGCAGCAGCTGGAGCTGGAGCGGGAGCGGCTGCGGCGGGAAATCCGCAAGGAGCTGAAGCTGAAGGAGGGTGCTGAGAACCTGCGGCGGGCCACCACTGACCTGGGCCGCAGCCTGGGCCCCGTAGAGCTGCTGCTGCGGGGCTCCTCGCGCCGCCTCGACCTGCTGCACCAGCAGCTGCAGGAGCTGCACGCCCACGTGGTGCTTCCCGACCCGGCGGCCACCCACG
Seq A exon
GTGAGCTGGGATGCCTCTGGGGATGCGGGACTCCAGGGATTCCACTGCTCACTGGCTCACCCATGGTCTCCAGAGCCAGGTTAACCCATCTCCACGGACCCCCAGGGAGATGCATGCCATGACCCCCGTAGCCACCAACACCCAGAGAGGTGCATACAGCCACACCAGCACCCGGTAACACTCAAGACCGTGCATGCTGTCACATGAATACCTCTAGACACAGCCACGCCAACACCCAGGCAACATTCAAGGATGTGCATGCAGTCACACAAACACCTAAAAAAACAGCCACACCAACACCCAGGCAACACCCAAGGGTGCACATACTGTCACACGAATACCTCCAGACACAGCCACGCCAACACCCCAGGCAACACTCAAGGATGTGCACACTGTCACACGAATACCCAGAAACTCCCACAGTTACATGGATGATAACCAAAGACTGTTTATTTTTGTTTTTGTTTGGAGACAGGATCTTGCCTTGTCACCCAGGCTGGAGTACAGTGGTGTGATCAAAGCTCACTATAGCCTCAATTTCCTGGGCTCAAACAATCCTCCCACCTCAGCCTTCCAAGTAGCTGGGACTAAAGGCATACACCACCATGCCTGGCTAATTTAATTTTTTTTTTTTTTTTTTTTTTTGTAGAGAAAGGGTCTTGGTATGCCGCCAGGGCTTGGCTAGAACTCCTGGCTTCAAGTGATCCTCCTGCTTTGGCCTCCCAAATGCTGGGAATACAGGCGTGAGCCATTGCACCCAGCCTGTTTTTTAATTTAAAACATTTTTATTGGTTTTAACATTTTTTTTCTTTTTGAGATGGAGTCTTGCTCCATCACCCAGGCTGGAGAGCAGTGGTGCAATCTCAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTATAGGCTTGCACCACCACGCCCGGCTAATGTTTGTATTTTTAGTAGAGATGGGATTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAACTGATCCACCCACCTCAGGTGATGTGCCTCCCAGAATGCTGGGATTACAGGTGTGAGCCACCTCACTCAGCAGCTTGAATTTTTTTTGGTGGGGAAGGACAGAGTTTTGCTCTTGTCACCCAGGCTGAAGTGCAATAGCACGATCTCGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGTGATTTTCCTGCTCCAGCCTCCCAAGTAGCTGGGATTATAGGCATGAGCCACCACGCCTGGCTAATTTTTGCATTTTTAGTAGAGACGGGATTTTGCCATGTTGGCCAGGGTGGTATTTAACTCCTGACTTCAAGCAATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTATAGGTGTGAGCCACTGCGCCCGGCCTCAGTCATTTCTGCACCCAGGGTCCCCTCAAGCATCACACCACTCTCCAGAGACTCATGCAGACACATGCATCCGGATGTGCCAACACCCGGAGACTCAGTCATACCAACCTGGAGATCTGAACTCACAGTTGTAGCAACAGTCAGAGATGTACGCAGAGCATCTCCCAACACCCACAATCTCAGACAGTCATTCTAACACATGGCGTCTCACAGAGTTACACTAACACCTAGGGAAACACACACTCAGCCATGCCAACACCCTGCAGCTCACAGATGGCACCACTCCCACACCCATAGGCTCACACAAGCCATGTACGTAGTTACTCATGGGCCTCTCAAATGCAGTGGACCCAGCACCAAGGACACACTAACACACCTGGGTGCTCGCCTGCACTCATTCATCCTGGGTTCTGCCCCAGCCCCGAGGGGTTTCCCTGGGAGGGTGGGTGGGTAGACTGCTGGGCCCTGGTGTCCCCCTGCCTGCCTGTCTGCTGGCCCCCAGCTCCCCCTCCTCCATGCCCCAGGGGCAATGCCCAGGCTGGGCTGAGGATGAAGCCTCCCAGGCAGGCCGAGGTGAGGATGCGTGGTGACTCTCTCCCACCTGTCGCCTCCAG
Seq C2 exon
ATGGCCCCCAGTCCCCTGGTGCGGGTGGCCCCACCTGCTCGGCCACCAACCTGAGCCGCGTGGCGGGCCTGGAGAAGCAGTTGGCCATTGAGCTGAAGGTGAAGCAGGGGGCGGAGAACATGATCCAGACCTACAGCAATGGCAGCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123143-PKN1:NM_002741:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=NA C2=0.490
Domain overlap (PFAM):
C1:
PF0218511=HR1=WD(100=68.3)
A:
NA
C2:
PF154561=Uds1=PU(48.6=70.6),PF0218511=HR1=PU(43.8=62.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)