DreINT0115988 @ danRer10
Intron Retention
Gene
ENSDARG00000099954 | plekhm1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2752]
Coordinates
chr12:4919491-4922257:+
Coord C1 exon
chr12:4919491-4919554
Coord A exon
chr12:4919555-4922099
Coord C2 exon
chr12:4922100-4922257
Length
2545 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCC
5' ss Score
7.91
3' ss Seq
ATTATTATTTTTGCACACAGATA
3' ss Score
7
Exon sequences
Seq C1 exon
ACTTCAGCAGAGGACATACTTGTTGGATAACAGTGACGTCTACAGTGTGTTAGACTTGCAGCAG
Seq A exon
GTATCCTCTTGCTCTTTCTTGTTGTTTATAGTGGAAACAATGGTGTGTGATGTGTATCATTTATTTATTCATTTATTTTATTTATTTTATTTTTACTTGTTTGACATGGACATCACAATTACACTGGACAACCAAATGCATTTGTTTAAGTGTTTTAGCAAACTTGCTAATTCTCAACACCTGTCCACAGGAGGCTTGAAAAAAATGGACAAAATGGAAATATAATAAATACATATGCACAACATTATAATTCTTTACATAAAATTACTGAAGGCAAAGGCGACATGCTCCAACAAACTAACAGCAGACTATTTGTGTTTTGTTTTTAGCCACCTTTTAAGAACACTAATAAAAATGTTTATATTACTTTCTGTAATAGTTTGGCTTCCTTTACACAGAAGACAGATTGACCAAAGGAGGTCTTACACTTTGGCATTACACATTCACCATTAGCAGTTGCTCGTGTGAATCTGTTTGATGCCTACTGATGAGATCAGAAGACAGGGTTCGAACTTGATTTTTTAAACATTTAAATACGTTTAGCTATGAGAATAACTTTTTCATCATTCTGTCTCAAATCAAATACATTTCTGAAATTTCCCCTGCTTGAGTTTTAGATTTTCTTAGCATTTCTTCCCAAAGAAAGGCATAAACAGAGATGAAAGCCAAAATGTGCATTTTTACTAATGTAAATGTGCAAATTTGTAGAGCAGGTTAAAGATTTCAAAATTTCCAGCAAAAATTCGCTGCCGGCAAATTGACTTTAGAACCATGACGACATCTTTTAACACTTCTCTAGTTACAGGCACGCACATTCGGAGAGAGAGACTTTGATCAATTCATTTTTTAATTTAAATGACTATGAATAACTTTTCCATGTACTTGGAGAGGATGAATTGACATCTAGACTAGCTGTAAAATAAGTATACACCCTACACACCATAAGAAATGGTTAATGTAAATTCATGTATCTTATTTAAATAATTTAAACTTTATTATTATTATTATTGTTATATTTATCAAATGTATTCTGTTTTTTGTCATTATTCCTTATTTACTGTATTATTATTTTTTTTTTATGTTTTTAATATATTACTTATTTGAAGTGCTTTGGCAATACTGTACTTAATGTGATGCCAATAAAGCAACTTAAACTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGACAGAGAGAGAAAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCAGGTGTTTATATGGAGTGAAACCAGATTCATACTTTCAACATTGTTTCACAGACATTATTCTTCAAGGGACTGTAGTATTAAATACACACTCTTATAGCTTTGGCTTTTTGTCTTCACTTTAAATTAAAGTTTACAATGGAATTTCCTTATAGTTGTGTTTGGTTCATGGCCTGCAAATTATTTTATAAAATATTGTCTAATTATAAGTATCGCTATTTTTTTGGTCGATATTCAACAATGCAGTACTATAACTGAAAGGTCCAGTAGGTGATCTGGCAAAATGCTAACCGGTTAGTTTATTATTTTTGGACGGCAGGGGAGGGACTGTGTTTCAAAACCACGCCTCCTGAAATTGCGAGCGAGCGCATCGTGACATGACAGCAGACAACCCACTAGTGACTAGTTCATGTCATTTGCCAGTTAGAAATGTAGTAAGTGTTTGTGACGTGCAGAAATTTTACTTATTACTAACCCACACTTACATTCTATTACACAGTGAATATTCAGAGTAGCATGGTAAACAGTATAGGGAGTGCGTCAAAGGCTGTCATTGTTCAAAAATGAACCAATGTGAATATAAAAGGAACTTCAGCTCAGTAAAGCAGGCTAGGCGGAATAGCGCTATTTACTGATGTTTTGTTGTTAAACTAAATAAAAATCTACATTATCGATGCTGTAAAAGCTCCCTTATGAAACTGAAAATAGTCACATTAATCTTTTACCGGGAGATTTCAGTGGCTGAGCAACACTTCTGTGCATATAACCCATTCGTAACAAAAAAGTGTACATCAGCTTTGGGGGACTAAAATGGTTTTAAAACAGAACATTACCTGTCTAACAGAAATACTTCAGCCATGGTGTCGTCCTCCCTCCAGCGTGCAAAACTAACTCCAATATTGATTCAGGATTTTAAAAAGTTTTGATTCTGCATTTGATTTTACAGCATCTCATGTGTCTCGTATGCACATGAACAGATGCGCAGAAGCTCAAATCTACATTTGTTGACAGACAGTTTGAGCTACTTATCAGAATTATGGGAGATGCCGGCCCGACTCTATTCAATTGGATGAACATTTTTTAGTTTTATGCCTCACCCAGAATATAAAGTTACACATTTAGATCATTTACTGTAATCATTACTATTAGACCGTGAAGAGACTTTCAACCAGCACAACAACAAATGTTTCTGAAGACAATCACCTACTGCACCTTTAAAGTGATGATCATTATCATGATGATTATTATTTTTGCACACAG
Seq C2 exon
ATAGCAGACGGCCACTACGAGTCTTACCTGCAGTCTCTAATTCAGTTTGGCTCCAAGCATGTGCACAACTGTGACCTTTGCACTCAGAGAGGCTTTATATGTCAGATCTGCAATGCCCCCGACATCATCTTCCCTTTCCAGTTTGACGTAACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099954:ENSDART00000171525:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=FE(10.3=100)
A:
NA
C2:
PF139011=DUF4206=FE(25.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]